Factsheet for Os11t0141700-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662600-02
Os05t0568100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Os01t0662600-02	AT4G22220.1	21798944
AT1G50420.1	Os05t0568100-01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0138200-00	Rice	cytosol	93.08	92.35
CDY45059	Canola	cytosol	25.3	42.11
Os12t0138100-00	Rice	cytosol	40.91	42.07
Os11t0141500-00	Rice	cytosol	40.91	42.07
CDY68881	Canola	cytosol	19.57	40.57
Zm00001d023248_P001	Maize	cytosol	38.93	38.93
GSMUA_Achr8P09690_001	Banana	cytosol	33.0	37.44
Os01t0948200-00	Rice	cytosol	32.61	37.33
HORVU5Hr1G043310.1	Barley	cytosol	39.33	36.18
TraesCS5B01G133800.1	Wheat	mitochondrion	39.13	35.87
TraesCS5A01G135000.1	Wheat	mitochondrion	39.33	35.86
KRH29080	Soybean	cytosol	32.02	35.6
TraesCS5D01G139500.1	Wheat	mitochondrion	39.13	35.42
KRH24106	Soybean	cytosol, nucleus, peroxisome	31.62	35.16
Bra018848.1-P	Field mustard	cytosol	30.43	35.0
Bra014251.1-P	Field mustard	cytosol	30.63	34.83
Solyc12g099900.1.1	Tomato	nucleus	32.21	34.83
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	32.21	34.46
CDY22795	Canola	cytosol, plastid	30.24	34.46
CDY03601	Canola	cytosol	30.43	34.3
PGSC0003DMT400011839	Potato	cytosol	31.62	34.19
KXG22822	Sorghum	mitochondrion	38.74	33.97
AT1G50420.1	Thale cress	cytosol	31.82	33.4
Solyc01g008910.2.1	Tomato	cytosol	31.23	33.19
VIT_06s0009g02390.t01	Wine grape	cytosol	31.03	33.12
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	30.43	33.12
VIT_13s0019g01220.t01	Wine grape	cytosol	31.23	33.05
PGSC0003DMT400058477	Potato	cytosol	30.83	33.05
Os06t0211500-00	Rice	cytosol	12.25	32.46
KRH27822	Soybean	nucleus, plastid	30.24	32.35
KRH62871	Soybean	cytosol	26.48	30.25
KRH29971	Soybean	cytosol	26.09	29.86
Os01t0646300-01	Rice	cytosol	24.7	25.25
Os05t0378200-00	Rice	cytosol	26.88	24.68
Os07t0567700-02	Rice	cytosol	22.13	24.51
Os06t0610350-01	Rice	cytosol	20.55	23.58
Os02t0197300-00	Rice	cytosol	20.55	23.32
Os05t0574900-01	Rice	plasma membrane	22.92	23.2
Os03t0707600-01	Rice	nucleus	25.3	20.48
Os05t0485400-00	Rice	peroxisome	19.96	20.2
Os06t0127800-01	Rice	plastid	24.51	20.1
Os11t0124300-01	Rice	nucleus, plastid	24.51	19.05
Os03t0723000-01	Rice	nucleus	21.74	19.03
Os12t0122000-01	Rice	plastid	24.7	18.94
Os04t0432100-00	Rice	nucleus	18.58	18.65
Os05t0378500-00	Rice	plastid	20.55	18.57
CDY37137	Canola	plastid	30.63	16.25
GSMUA_Achr11P...	Banana	cytosol	30.43	13.97
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.19	1.7
Os11t0141550-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os11t0141700-00	EnsemblPlantsGene:Os11g0141700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF21	PFAM:PF03514	PFscan:PS50985	ProteinID:BAT12622.1	SEG:seg	UniParc:UPI000393AA20
UniProt:A0A0P0XYX6	MapMan:15.5.12	:	:	:	:

Description

Similar to GRAS family transcription factor containing protein. (Os11t0141700-00)

Coordinates

chr11:-:1942620..1944140

Molecular Weight (calculated)

55199.7 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.187

Length

506 amino acids

Sequence
(BLAST)

001: MFSGTDASSP ELSLCSPYGP WTQGRSPTEE LGLALLECAA HVETGPMEKA TRCLARATGL AAAAAAGDGP RKRLAVAMVD CLARRLLRPV QAITDALIDP
101: SVYLDRRSVR AARRGFFELS PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT VVHDDGELLA KMEELVSDEA
201: EELGMEFQFH GVVGQLEDLD FSNLRNVLEI KSGEALVVSC TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQHMAVNSC PSSSGGGSVQ YKDDDPYRSP
301: ATPLTFVSPP VSTPHFQTPA ALASFLSAVR ALSPKILVVA EQDADHNGVS FRKRFCEALH HYAAVFDSLD AAAATTSAAS RLWSPDERAQ VERVVVGEEI
401: KGVLLRDGAH RREWHDRLRQ WAARMEMAGF TGVPLSYAAI KKGNDMVRRC GLRRCENKEC GGCLLLCWSS RPLYSISAWR PAASRGSGSG SERSEYVHVG
501: AEPDDR

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.