Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | CDX76383 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX79137 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX82924 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDY27446 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22795 | Canola | cytosol, plastid | 44.76 | 96.17 |
| CDY45059 | Canola | cytosol | 28.83 | 90.46 |
| CDY03601 | Canola | cytosol | 42.03 | 89.31 |
| CDY68881 | Canola | cytosol | 22.43 | 87.7 |
| AT1G50420.1 | Thale cress | cytosol | 41.2 | 81.54 |
| PGSC0003DMT400011839 | Potato | cytosol | 31.87 | 64.96 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 32.18 | 64.77 |
| Solyc12g099900.1.1 | Tomato | nucleus | 31.76 | 64.74 |
| KRH29080 | Soybean | cytosol | 29.77 | 62.42 |
| PGSC0003DMT400058477 | Potato | cytosol | 30.61 | 61.86 |
| Solyc01g008910.2.1 | Tomato | cytosol | 30.4 | 60.92 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 29.04 | 60.88 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 29.45 | 60.43 |
| KRH27822 | Soybean | nucleus, plastid | 29.04 | 58.56 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 10.8 | 57.54 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 26.73 | 57.17 |
| Os01t0948200-00 | Rice | cytosol | 24.63 | 53.17 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 26.31 | 53.07 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 24.42 | 52.13 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 24.53 | 51.66 |
| Zm00001d042127_P001 | Maize | plastid | 24.0 | 51.23 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 24.42 | 51.21 |
| Zm00001d011881_P001 | Maize | cytosol | 23.58 | 50.11 |
| EES02045 | Sorghum | cytosol, plastid | 24.0 | 49.89 |
| Os06t0211500-00 | Rice | cytosol | 8.6 | 42.93 |
| CDY50706 | Canola | cytosol, extracellular, plastid | 2.52 | 39.34 |
| CDY43123 | Canola | cytosol, extracellular, plastid | 2.52 | 39.34 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 12.58 | 38.1 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 12.58 | 38.1 |
| Os12t0138100-00 | Rice | cytosol | 19.5 | 37.8 |
| Os11t0141500-00 | Rice | cytosol | 19.39 | 37.6 |
| Zm00001d023248_P001 | Maize | cytosol | 19.39 | 36.56 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 5.56 | 36.3 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 11.84 | 35.99 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 11.84 | 35.99 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 11.64 | 35.58 |
| EES16518 | Sorghum | cytosol | 16.46 | 34.89 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 19.92 | 34.55 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 19.71 | 34.06 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 15.3 | 33.95 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 19.71 | 33.87 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 19.81 | 33.81 |
| EES09233 | Sorghum | cytosol | 16.14 | 31.62 |
| KXG22822 | Sorghum | mitochondrion | 19.08 | 31.54 |
| Os12t0138200-00 | Rice | cytosol | 16.56 | 30.98 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 14.47 | 30.94 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 14.36 | 30.72 |
| Os11t0141700-00 | Rice | cytosol | 16.25 | 30.63 |
| GSMUA_Achr11P... | Banana | cytosol | 35.32 | 30.58 |
| OQU77884 | Sorghum | plasma membrane | 14.57 | 30.55 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 15.2 | 30.53 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 14.88 | 29.96 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 14.47 | 29.87 |
| Zm00001d052463_P001 | Maize | cytosol | 16.35 | 29.83 |
| CDY50028 | Canola | nucleus, plastid | 12.89 | 29.5 |
| CDY54362 | Canola | plastid | 13.0 | 29.45 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 14.57 | 29.26 |
| CDY70426 | Canola | cytosol | 15.2 | 28.6 |
| TraesCSU01G014000.1 | Wheat | cytosol | 8.81 | 28.57 |
| CDY64484 | Canola | mitochondrion | 7.34 | 28.46 |
| CDY55037 | Canola | cytosol | 15.09 | 28.4 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 14.15 | 27.72 |
| OQU77885 | Sorghum | cytosol | 13.94 | 27.59 |
| CDY27670 | Canola | cytosol | 11.53 | 27.23 |
| CDY38434 | Canola | cytosol | 14.15 | 26.47 |
| Zm00001d023247_P001 | Maize | plastid | 15.41 | 26.25 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 14.26 | 25.9 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 14.68 | 25.18 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 14.78 | 24.65 |
| CDY04092 | Canola | cytosol | 13.52 | 24.16 |
| Os05t0378200-00 | Rice | cytosol | 13.84 | 23.96 |
| CDY64837 | Canola | cytosol | 13.52 | 23.8 |
| CDX78219 | Canola | nucleus, plastid | 13.94 | 22.06 |
| Os05t0378500-00 | Rice | plastid | 12.79 | 21.79 |
| CDY70213 | Canola | plastid | 14.57 | 21.62 |
| CDX73496 | Canola | nucleus, plastid | 13.94 | 21.38 |
| CDY49199 | Canola | plastid | 14.05 | 21.2 |
| CDY45974 | Canola | plastid | 14.26 | 21.09 |
| CDY72338 | Canola | cytosol | 12.89 | 21.03 |
| CDY53846 | Canola | cytosol | 12.79 | 20.93 |
| CDY47352 | Canola | plastid | 13.84 | 20.72 |
| CDY43122 | Canola | nucleus | 7.55 | 17.27 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 7.44 | 17.07 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.15 | 3.12 |
| Os11t0141550-01 | Rice | cytosol | 0.1 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078HGZ1 | UniProt:A0A078HGZ1 | EnsemblPlants:CDY37137 | ProteinID:CDY37137 | ProteinID:CDY37137.1 |
| GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00063377001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI0004EDC7DF | SEG:seg |
Description
BnaC06g03620DBnaC06g03620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGZ1]
Coordinates
chrLK032392:+:257707..264140
Molecular Weight (calculated)
106985.0 Da
IEP (calculated)
6.288
GRAVY (calculated)
-0.113
Length
954 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGSLQ NANAALEQLS LLSSPDGDTM QRVAAYFTEA
101: LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG PPHLRITGVH
201: HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS
301: LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYFA
401: MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSMVLG LCFVCLDVSF SESYFSKTAF YLKQKIFLNI KPSHFLLNSF VFLVLSIDAK IKFSGSLKVF
501: RILGLTFWPS MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGSLQ NANAALEQLS LLSSPDGDTM
601: QRVAAYFTEA LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG
701: PPHLRITGVH HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR
801: ISRFLNAMWS LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG
901: FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK
101: LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG PPHLRITGVH
201: HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS
301: LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYFA
401: MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSMVLG LCFVCLDVSF SESYFSKTAF YLKQKIFLNI KPSHFLLNSF VFLVLSIDAK IKFSGSLKVF
501: RILGLTFWPS MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGSLQ NANAALEQLS LLSSPDGDTM
601: QRVAAYFTEA LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG
701: PPHLRITGVH HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR
801: ISRFLNAMWS LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG
901: FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.