CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDX89402
CDX89404
CDX94426
CDX94429
CDX98921
CDY15651
CDY49480
CDY50821
CDY55759
CDY57992
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	CDX79848	AT2G42790.1	21798944
AT4G22220.1	CDX79851	AT2G42790.1	21798944
AT4G22220.1	CDY15651	AT2G42790.1	21798944
AT4G22220.1	CDY50821	AT2G42790.1	21798944
AT4G22220.1	CDX89402	AT4G25680.1	21798944
AT4G22220.1	CDX89404	AT4G25680.1	21798944
AT4G22220.1	CDX94426	AT4G25680.1	21798944
AT4G22220.1	CDX94429	AT4G25680.1	21798944
AT4G22220.1	CDY49480	AT4G25680.1	21798944
AT4G22220.1	CDY66007	AT4G25680.1	21798944
AT4G22220.1	CDX98921	AT5G06410.1	21798944
AT4G22220.1	CDY55759	AT5G06410.1	21798944
AT4G22220.1	CDY57992	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013601.1-P	Field mustard	mitochondrion	98.1	97.48
CDX79137	Canola	mitochondrion	94.94	94.34
CDX76383	Canola	mitochondrion	94.3	90.85
CDY27446	Canola	mitochondrion	93.67	90.24
AT4G22220.1	Thale cress	mitochondrion	93.04	88.02
KRH57077	Soybean	mitochondrion	77.85	74.55
CDX94542	Canola	cytosol	50.63	74.07
KRH03283	Soybean	mitochondrion	76.58	73.33
PGSC0003DMT400046740	Potato	mitochondrion	74.68	71.08
KRH54391	Soybean	mitochondrion	77.22	70.93
Solyc03g112900.2.1	Tomato	mitochondrion	74.05	70.48
KRH19966	Soybean	mitochondrion	75.95	69.77
Solyc07g007450.2.1	Tomato	mitochondrion	70.25	67.68
VIT_01s0127g00450.t01	Wine grape	mitochondrion	54.43	67.19
CDY68710	Canola	mitochondrion, peroxisome	43.67	60.53
PGSC0003DMT400078947	Potato	mitochondrion	70.89	50.91
PGSC0003DMT400035008	Potato	mitochondrion	26.58	26.75
CDX94083	Canola	nucleus	39.87	21.5

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	GO:A0A078D3U9	EnsemblPlants:CDX82924	ProteinID:CDX82924	ProteinID:CDX82924.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00138311001	InterPro:ISC_FeS_clus_asmbl_IscU
InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	SUPFAM:SSF82649	TIGRFAMs:TIGR01999
UniParc:UPI00019AF72B	:	:	:	:	:

Description

BnaC01g13740D

Coordinates

chrLK031830:-:1374190..1376606

Molecular Weight (calculated)

17092.7 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.236

Length

158 amino acids

Sequence
(BLAST)

001: MMIRQAAKKA LGITSRQLTP CSVGIFRSYH ENVIDHYDNP RNVGSFDKND PTVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME EVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKD KRVKTNGA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.