Factsheet for VIT_01s0127g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_08s0032g00960.t01
VIT_12s0142g00610.t01
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT4G22220.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT4G22220.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944
AT4G22220.1	VIT_08s0032g00960.t01	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112900.2.1	Tomato	mitochondrion	76.56	59.04
PGSC0003DMT400046740	Potato	mitochondrion	76.56	59.04
KRH57077	Soybean	mitochondrion	74.22	57.58
KRH03283	Soybean	mitochondrion	73.44	56.97
Solyc07g007450.2.1	Tomato	mitochondrion	72.66	56.71
Bra013601.1-P	Field mustard	mitochondrion	67.97	54.72
KRH19966	Soybean	mitochondrion	73.44	54.65
KRH54391	Soybean	mitochondrion	73.44	54.65
CDX82924	Canola	mitochondrion	67.19	54.43
CDX79137	Canola	mitochondrion	67.19	54.09
Bra020855.1-P	Field mustard	mitochondrion	67.97	53.05
CDX76383	Canola	mitochondrion	67.97	53.05
CDY27446	Canola	mitochondrion	67.19	52.44
AT4G22220.1	Thale cress	mitochondrion	67.97	52.1
AT4G04080.1	Thale cress	mitochondrion	63.28	47.37
CDY68710	Canola	mitochondrion, peroxisome	42.19	47.37
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	41.41	46.09
AT3G01020.1	Thale cress	mitochondrion	58.59	46.01
CDX94542	Canola	cytosol	38.28	45.37
PGSC0003DMT400078947	Potato	mitochondrion	73.44	42.73
PGSC0003DMT400035008	Potato	mitochondrion	26.56	21.66
VIT_01s0127g00460.t01	Wine grape	cytosol, endoplasmic reticulum	3.12	7.84

Protein Annotations

EntrezGene:100255079	wikigene:100255079	Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	ProteinID:CCB51793	ProteinID:CCB51793.1
UniProt:F6HHV6	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006879	GO:GO:0008150	GO:GO:0008152	GO:GO:0008198	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016226	GO:GO:0016740	GO:GO:0019538	GO:GO:0019725	GO:GO:0036455
GO:GO:0051536	GO:GO:0051537	GO:GO:0051539	GO:GO:0097428	EntrezGene:LOC100255079	wikigene:LOC100255079
InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	SUPFAM:SSF82649	TIGR:TC63062
TIGR:TC68488	UniParc:UPI00021084B3	ArrayExpress:VIT_01s0127g00450	EnsemblPlantsGene:VIT_01s0127g00450	EnsemblPlants:VIT_01s0127g00450.t01	unigene:Vvi.6801
RefSeq:XP_002265909	RefSeq:XP_002265909.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:7814084..7815289

Molecular Weight (calculated)

13824.4 Da

IEP (calculated)

7.454

GRAVY (calculated)

-0.391

Length

128 amino acids

Sequence
(BLAST)

001: MLRSGCSRIL GLGQQGKQAQ SQALLRFYHE RVVDHYNNPR NVGSFDKNDP DVGTGLVGAP ACGDVMKLQI KVDDQTGKIV DACFKTFGCG SAIASSSVAT
101: EWVKGKQTEE VLSIKNTEQG GEHFHIAQ

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.