CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 7
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH08874
KRH14452
KRH32887
KRH35244
KRH38387
KRH46090
KRH72132
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	KRG98876	AT2G42790.1	21798944
AT4G22220.1	KRH14452	AT2G42790.1	21798944
AT4G22220.1	KRH46090	AT2G42790.1	21798944
AT4G22220.1	KRH73702	AT2G42790.1	21798944
AT4G22220.1	KRH08874	AT4G25680.1	21798944
AT4G22220.1	KRH35244	AT4G25680.1	21798944
AT4G22220.1	KRH38387	AT4G25680.1	21798944
AT4G22220.1	KRH32887	AT5G06410.1	21798944
AT4G22220.1	KRH72132	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19966	Soybean	mitochondrion	95.93	95.93
KRH57077	Soybean	mitochondrion	82.56	86.06
KRH03283	Soybean	mitochondrion	81.4	84.85
GSMUA_Achr6P22070_001	Banana	cytosol	47.67	81.19
GSMUA_Achr10P...	Banana	cytosol	48.84	80.0
CDX82924	Canola	mitochondrion	70.93	77.22
Solyc03g112900.2.1	Tomato	mitochondrion	74.42	77.11
PGSC0003DMT400046740	Potato	mitochondrion	74.42	77.11
Bra013601.1-P	Field mustard	mitochondrion	70.93	76.73
CDX79137	Canola	mitochondrion	70.93	76.73
GSMUA_Achr6P09070_001	Banana	mitochondrion	75.58	76.47
CDX94542	Canola	cytosol	47.67	75.93
CDX76383	Canola	mitochondrion	72.09	75.61
Bra020855.1-P	Field mustard	mitochondrion	71.51	75.0
CDY27446	Canola	mitochondrion	70.93	74.39
VIT_01s0127g00450.t01	Wine grape	mitochondrion	54.65	73.44
AT4G22220.1	Thale cress	mitochondrion	70.93	73.05
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	48.84	73.04
Os01t0662600-02	Rice	mitochondrion	69.77	70.18
Solyc07g007450.2.1	Tomato	mitochondrion	66.86	70.12
TraesCS3D01G240900.1	Wheat	mitochondrion	70.93	69.71
TraesCS3A01G240500.1	Wheat	mitochondrion	70.93	69.71
TraesCS3B01G268800.1	Wheat	mitochondrion	71.51	69.49
TraesCS1B01G436500.1	Wheat	mitochondrion	66.86	68.86
TraesCS1D01G414700.1	Wheat	mitochondrion	66.86	68.45
Os05t0568100-01	Rice	mitochondrion	67.44	67.44
TraesCS1A01G406300.1	Wheat	mitochondrion	67.44	67.44
Zm00001d043971_P001	Maize	mitochondrion	69.77	66.67
EES03388	Sorghum	mitochondrion	69.77	66.3
AT4G04080.1	Thale cress	mitochondrion	65.12	65.5
AT3G01020.1	Thale cress	mitochondrion	60.47	63.8
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	68.6	61.78
Zm00001d029638_P001	Maize	cytosol	27.91	60.76
Zm00001d043816_P001	Maize	cytosol, plastid	27.33	59.49
CDY68710	Canola	mitochondrion, peroxisome	37.21	56.14
PGSC0003DMT400078947	Potato	mitochondrion	70.35	55.0
Zm00001d011514_P001	Maize	mitochondrion	62.79	54.0
KXG22553	Sorghum	plastid	68.6	52.91
Zm00001d030959_P001	Maize	extracellular, mitochondrion	30.81	45.69
PGSC0003DMT400035008	Potato	mitochondrion	30.23	33.12
HORVU3Hr1G059830.7	Barley	mitochondrion	30.23	20.55

Protein Annotations

EntrezGene:100806169	Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	EMBL:ACUP02003516	EnsemblPlantsGene:GLYMA_06G182000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006879	GO:GO:0008150	GO:GO:0008152
GO:GO:0008198	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0016740
GO:GO:0019538	GO:GO:0019725	GO:GO:0036455	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0051539	GO:GO:0097428	UniProt:I1KCF6	InterPro:ISC_FeS_clus_asmbl_IscU	EnsemblPlants:KRH54391	ProteinID:KRH54391
ProteinID:KRH54391.1	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	SUPFAM:SSF82649
TIGRFAMs:TIGR01999	UniParc:UPI00023392DA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:15571347..15573642

Molecular Weight (calculated)

18287.1 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.156

Length

172 amino acids

Sequence
(BLAST)

001: MLRIAASAKR IVQTASLEAP PLGIRVLPRL YHERVVDHYD NPRNVGSFDK NDPTVGTGLV GAPACGDVMK LQIKVDDKTG KIVDARFKTF GCGSAIASSS
101: VATEWVKGKQ MEEVLTIKNT EIAKHLSLPP VKLHCSMLAE DAIKAAVKDY EAKRASASAG GQATTGEKAV TA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.