Factsheet for Solyc03g112900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006860.2.1
Solyc02g082060.1.1
Solyc07g055840.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	Solyc07g055840.2.1	AT2G42790.1	21798944
AT4G22220.1	Solyc12g011000.1.1	AT2G42790.1	21798944
AT4G22220.1	Solyc02g082060.1.1	AT4G25680.1	21798944
AT4G22220.1	Solyc01g006860.2.1	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046740	Potato	mitochondrion	97.59	97.59
GSMUA_Achr6P22070_001	Banana	cytosol	50.6	83.17
GSMUA_Achr10P...	Banana	cytosol	52.41	82.86
Solyc07g007450.2.1	Tomato	mitochondrion	79.52	80.49
GSMUA_Achr6P09070_001	Banana	mitochondrion	80.72	78.82
KRH03283	Soybean	mitochondrion	77.11	77.58
KRH57077	Soybean	mitochondrion	76.51	76.97
VIT_01s0127g00450.t01	Wine grape	mitochondrion	59.04	76.56
KRH54391	Soybean	mitochondrion	77.11	74.42
Bra013601.1-P	Field mustard	mitochondrion	71.08	74.21
CDX82924	Canola	mitochondrion	70.48	74.05
Os01t0662600-02	Rice	mitochondrion	75.9	73.68
KRH19966	Soybean	mitochondrion	75.9	73.26
CDX79137	Canola	mitochondrion	69.88	72.96
TraesCS3A01G240500.1	Wheat	mitochondrion	76.51	72.57
TraesCS3D01G240900.1	Wheat	mitochondrion	76.51	72.57
TraesCS3B01G268800.1	Wheat	mitochondrion	77.11	72.32
TraesCS1D01G414700.1	Wheat	mitochondrion	72.89	72.02
CDX76383	Canola	mitochondrion	71.08	71.95
Bra020855.1-P	Field mustard	mitochondrion	71.08	71.95
TraesCS1B01G436500.1	Wheat	mitochondrion	72.29	71.86
Os05t0568100-01	Rice	mitochondrion	74.1	71.51
CDY27446	Canola	mitochondrion	70.48	71.34
CDX94542	Canola	cytosol	46.39	71.3
Zm00001d043971_P001	Maize	mitochondrion	77.11	71.11
AT4G22220.1	Thale cress	mitochondrion	71.08	70.66
EES03388	Sorghum	mitochondrion	75.9	69.61
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	47.59	68.7
TraesCS1A01G406300.1	Wheat	mitochondrion	71.08	68.6
Zm00001d029638_P001	Maize	cytosol	31.33	65.82
Zm00001d043816_P001	Maize	cytosol, plastid	30.72	64.56
AT3G01020.1	Thale cress	mitochondrion	62.65	63.8
AT4G04080.1	Thale cress	mitochondrion	65.06	63.16
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	71.69	62.3
Zm00001d011514_P001	Maize	mitochondrion	69.88	58.0
KXG22553	Sorghum	plastid	71.69	53.36
CDY68710	Canola	mitochondrion, peroxisome	35.54	51.75
Zm00001d030959_P001	Maize	extracellular, mitochondrion	33.73	48.28
PGSC0003DMT400035008	Potato	mitochondrion	33.13	35.03
HORVU3Hr1G059830.7	Barley	mitochondrion	30.72	20.16

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006879	GO:GO:0008150	GO:GO:0008152	GO:GO:0008198	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0016740	GO:GO:0019538	GO:GO:0019725
GO:GO:0036455	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051539	GO:GO:0097428
InterPro:ISC_FeS_clus_asmbl_IscU	UniProt:K4BKE3	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8
SUPFAM:SSF82649	EnsemblPlantsGene:Solyc03g112900.2	EnsemblPlants:Solyc03g112900.2.1	TIGRFAMs:TIGR01999	UniParc:UPI0002767863	:

Description

Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:K4BKE3]

Coordinates

chr3:+:63185027..63188415

Molecular Weight (calculated)

17939.6 Da

IEP (calculated)

9.236

GRAVY (calculated)

-0.313

Length

166 amino acids

Sequence
(BLAST)

001: MLKHVGNRIL GLGQRSPVTR GVLTRLYHER VVDHYNNPRN VGSFDKNDPT VGTGLVGAPA CGDVMKLQIK VDEQTGKITD ACFKTFGCGS AIASSSVATE
101: WVKGRQMEEV LSIKNTEIAK HLSLPPVKLH CSMLAEDAIK AAVKDYEAKK AKFDGKAENA SSEKAV

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.