Factsheet for PGSC0003DMT400035008

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400020128
PGSC0003DMT400044692
PGSC0003DMT400054981

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400018924	AT4G25680.1	21798944
AT4G22220.1	PGSC0003DMT400054981	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22070_001	Banana	cytosol	21.66	33.66
Solyc03g112900.2.1	Tomato	mitochondrion	35.03	33.13
PGSC0003DMT400046740	Potato	mitochondrion	34.39	32.53
GSMUA_Achr10P...	Banana	cytosol	21.66	32.38
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	23.57	32.17
KRH03283	Soybean	mitochondrion	33.76	32.12
KRH57077	Soybean	mitochondrion	33.76	32.12
KRH54391	Soybean	mitochondrion	33.12	30.23
GSMUA_Achr6P09070_001	Banana	mitochondrion	31.85	29.41
TraesCS1B01G436500.1	Wheat	mitochondrion	31.21	29.34
Os05t0568100-01	Rice	mitochondrion	31.85	29.07
KRH19966	Soybean	mitochondrion	31.85	29.07
Os01t0662600-02	Rice	mitochondrion	31.21	28.66
TraesCS1D01G414700.1	Wheat	mitochondrion	30.57	28.57
TraesCS3A01G240500.1	Wheat	mitochondrion	31.85	28.57
TraesCS3D01G240900.1	Wheat	mitochondrion	31.85	28.57
TraesCS1A01G406300.1	Wheat	mitochondrion	31.21	28.49
TraesCS3B01G268800.1	Wheat	mitochondrion	31.85	28.25
Zm00001d043971_P001	Maize	mitochondrion	31.85	27.78
CDX94542	Canola	cytosol	19.11	27.78
EES03388	Sorghum	mitochondrion	31.21	27.07
AT3G01020.1	Thale cress	mitochondrion	28.03	26.99
AT4G22220.1	Thale cress	mitochondrion	28.66	26.95
CDX82924	Canola	mitochondrion	26.75	26.58
VIT_01s0127g00450.t01	Wine grape	mitochondrion	21.66	26.56
Bra013601.1-P	Field mustard	mitochondrion	26.75	26.42
CDX76383	Canola	mitochondrion	27.39	26.22
Bra020855.1-P	Field mustard	mitochondrion	27.39	26.22
CDY27446	Canola	mitochondrion	27.39	26.22
CDX79137	Canola	mitochondrion	26.11	25.79
Zm00001d029638_P001	Maize	cytosol	12.74	25.32
AT4G04080.1	Thale cress	mitochondrion	27.39	25.15
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	30.57	25.13
PGSC0003DMT400078947	Potato	mitochondrion	35.03	25.0
Zm00001d043816_P001	Maize	cytosol, plastid	12.1	24.05
Zm00001d011514_P001	Maize	mitochondrion	30.57	24.0
KXG22553	Sorghum	plastid	31.85	22.42
CDY68710	Canola	mitochondrion, peroxisome	15.92	21.93
Zm00001d030959_P001	Maize	extracellular, mitochondrion	15.92	21.55
HORVU3Hr1G059830.7	Barley	mitochondrion	17.83	11.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400035008	EnsemblPlantsGene:PGSC0003DMG400013462	EntrezGene:102578567	Gene3D:3.90.1010.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0051536	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PGSC:PGSC0003DMG400013462	RefSeq:XP_006356081.1
UniParc:UPI000295450E	UniProt:M1B1N7	MapMan:7.11.2.1.2	:	:	:

Description

Iron-sulfer cluster scaffold protein ISU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013462]

Coordinates

chr3:-:776395..778628

Molecular Weight (calculated)

17940.7 Da

IEP (calculated)

9.680

GRAVY (calculated)

-0.484

Length

157 amino acids

Sequence
(BLAST)

001: MLKQIGNRVS GVSPVNLWRW RQLYHYNDHR NVGKGVAGAP VCEDMMKPQI KIDDEMRKWM EDYFKGGIPC ISLVAYQPNA KMIVDEKTGK IVNIVGLETN
101: VAYSYFVRGD RKPFFHRPPV RLQYGRMLAD DAITAALKDY EAKKTSFSDH SKNAVDA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.