Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0127g00460.t01 | Wine grape | cytosol, endoplasmic reticulum | 10.24 | 58.82 |
| Zm00001d029638_P001 | Maize | cytosol | 13.31 | 49.37 |
| Zm00001d043816_P001 | Maize | cytosol, plastid | 12.97 | 48.1 |
| CDX94542 | Canola | cytosol | 15.02 | 40.74 |
| CDX79137 | Canola | mitochondrion | 21.84 | 40.25 |
| CDY27446 | Canola | mitochondrion | 22.53 | 40.24 |
| CDX82924 | Canola | mitochondrion | 21.5 | 39.87 |
| CDX76383 | Canola | mitochondrion | 22.18 | 39.63 |
| TraesCS1B01G436500.1 | Wheat | mitochondrion | 21.5 | 37.72 |
| TraesCS1D01G414700.1 | Wheat | mitochondrion | 21.5 | 37.5 |
| TraesCS1A01G406300.1 | Wheat | mitochondrion | 21.5 | 36.63 |
| Os05t0568100-01 | Rice | mitochondrion | 21.16 | 36.05 |
| CDY68710 | Canola | mitochondrion, peroxisome | 12.97 | 33.33 |
| KXG22553 | Sorghum | plastid | 21.16 | 27.8 |
| HORVU3Hr1G059830.7 | Barley | mitochondrion | 15.02 | 17.39 |
Protein Annotations
| Gene3D:3.90.1010.10 | MapMan:7.11.2.1.2 | GO:A0A078E3R9 | EnsemblPlants:CDX94083 | ProteinID:CDX94083 | ProteinID:CDX94083.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 | GO:GO:0051536 | EnsemblPlantsGene:GSBRNA2T00156990001 | InterPro:NIF_FeS_clus_asmbl_NifU_N |
| PFAM:PF01592 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | SUPFAM:SSF82649 | UniParc:UPI0004EDC0B3 | SEG:seg |
Description
BnaC07g37170D
Coordinates
chrLK031879:-:585509..587240
Molecular Weight (calculated)
32545.9 Da
IEP (calculated)
8.291
GRAVY (calculated)
-0.423
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELERGTSQ MTTTETHRTT TFLDLLRRQM SGVDRTRRKR TLKERLRFKC IGCCGPIRRL HQPNNTLHSP TTSSEDELET RFAPGSDIGA GASSGSGMNL
101: ATALEAERYN RGDPTEVDMT PTRVSLMRLL DETAERAVDD GRETEISTAL TGNDTFCGSA IAASYLANEW VKGKAKEEVM SIKNAQVPEI AKHLSLPPVK
201: LHCSMLPEDA TKAALNDYKD TEQTVFFHIS PSCLRQAMHP LQKFATRETR TILSNKLLEA VQMGTKSTVK ALSSFPLLLY RCVSSIYVTF LHA
101: ATALEAERYN RGDPTEVDMT PTRVSLMRLL DETAERAVDD GRETEISTAL TGNDTFCGSA IAASYLANEW VKGKAKEEVM SIKNAQVPEI AKHLSLPPVK
201: LHCSMLPEDA TKAALNDYKD TEQTVFFHIS PSCLRQAMHP LQKFATRETR TILSNKLLEA VQMGTKSTVK ALSSFPLLLY RCVSSIYVTF LHA
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.