Factsheet for TraesCS4A01G185900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G026010.3	Barley	cytosol	93.05	93.05
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	30.04	91.78
TraesCS4D01G127800.2	Wheat	mitochondrion	90.81	85.26
EES16518	Sorghum	cytosol	59.64	59.11
Zm00001d023247_P001	Maize	plastid	48.21	38.39
CDY68881	Canola	cytosol	20.85	38.11
CDY45059	Canola	cytosol	25.78	37.83
GSMUA_Achr8P09690_001	Banana	cytosol	32.74	32.74
TraesCS3A01G487500.1	Wheat	cytosol, plastid	32.06	31.99
KRH29080	Soybean	cytosol	32.51	31.87
KRH24106	Soybean	cytosol, nucleus, peroxisome	32.29	31.65
Bra018848.1-P	Field mustard	cytosol	30.72	31.14
KRH29971	Soybean	cytosol	30.72	31.0
TraesCS5A01G135000.1	Wheat	mitochondrion	38.56	30.99
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	32.74	30.87
Bra014251.1-P	Field mustard	cytosol	30.72	30.79
Solyc12g099900.1.1	Tomato	nucleus	32.29	30.77
CDY22795	Canola	cytosol, plastid	30.49	30.63
CDY03601	Canola	cytosol	30.72	30.51
KRH62871	Soybean	cytosol	30.27	30.47
PGSC0003DMT400011839	Potato	cytosol	31.61	30.13
VIT_13s0019g01220.t01	Wine grape	cytosol	32.29	30.13
TraesCS2A01G532900.1	Wheat	cytosol	28.7	29.77
VIT_06s0009g02390.t01	Wine grape	cytosol	31.61	29.75
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	30.94	29.68
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	21.52	29.45
Solyc01g008910.2.1	Tomato	cytosol	31.39	29.41
AT1G50420.1	Thale cress	cytosol	31.61	29.25
PGSC0003DMT400058477	Potato	cytosol	30.94	29.24
KRH27822	Soybean	nucleus, plastid	29.15	27.48
TraesCS3A01G392600.1	Wheat	cytosol	24.89	23.22
TraesCS6A01G159500.1	Wheat	cytosol	20.4	23.21
TraesCS3A01G233000.1	Wheat	plasma membrane	25.78	22.95
TraesCS5A01G511900.1	Wheat	cytosol	22.42	22.94
TraesCS3A01G392500.1	Wheat	cytosol	25.56	22.05
TraesCS2A01G200700.1	Wheat	cytosol	22.2	22.0
TraesCS3A01G392400.1	Wheat	cytosol	25.11	21.58
TraesCS7A01G382800.1	Wheat	cytosol	20.4	21.36
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	22.65	20.95
TraesCS1A01G304000.1	Wheat	peroxisome	21.52	19.55
TraesCS4A01G191300.1	Wheat	cytosol	25.11	18.15
TraesCS4A01G271000.1	Wheat	cytosol	24.66	17.74
TraesCS4A01G260600.1	Wheat	cytosol	21.3	17.43
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	18.61	17.29
TraesCS2A01G096800.1	Wheat	nucleus	27.58	17.2
TraesCS5A01G144000.1	Wheat	plastid	24.66	16.98
TraesCS7A01G059000.1	Wheat	plastid	22.87	16.27
TraesCS4A01G430600.1	Wheat	plastid	22.65	16.26
CDY37137	Canola	plastid	30.72	14.36
GSMUA_Achr11P...	Banana	cytosol	30.04	12.16

Protein Annotations

EnsemblPlants:TraesCS4A01G185900.1	EnsemblPlantsGene:TraesCS4A01G185900	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF133
PFAM:PF03514	PFscan:PS50985	MapMan:15.5.12	:	:	:

Description

No Description!

Coordinates

chr4A:+:465226193..465228911

Molecular Weight (calculated)

50198.7 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.134

Length

446 amino acids

Sequence
(BLAST)

001: MHGLCAHEQG TVDDLAHLGP ALYECMAHVI EGSFEKTDRS LRKIRKLASL VDGPLQRLSM IIADSLARRL LCPIQGFAAA LIDPSRYLEQ ACLRSARENF
101: ASISPYLSTG FVTINRAMLE QVQDQKVVRI VDLSCSTTHP WQWLKILHDF HGRPGGPPEL RLTVVHEDSE FLDNMQALLC RQAANLKLCF YFDKVIGKLE
201: TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSVSRD GIAQLQQMAN MARLKQMACS ACSPASTLNY PQTPSPQRQI PSLLVSFLSA IRALEPKIIV
301: MMEQDADHNA PLFHDRFTKT VDYYAALFDS LNAVDSASPQ RARVERVLLG EEIKNILVCE GVQRLERHEK LSQWEMHMQR CEVDHVPLSF EAIREGKERL
401: MSYGLKQCKS DEDNADLLLC WGATRLYSIS AWRPHSSNAA PNKVAV

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.