Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G208500.1 | Wheat | cytosol | 98.67 | 98.89 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 97.78 | 98.0 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 88.67 | 86.18 |
| Os07t0567700-02 | Rice | cytosol | 86.22 | 84.9 |
| Zm00001d021826_P001 | Maize | cytosol | 83.33 | 82.96 |
| KXG36498 | Sorghum | cytosol, plastid | 83.33 | 81.52 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 47.11 | 68.83 |
| CDY64484 | Canola | mitochondrion | 35.78 | 65.45 |
| Bra025456.1-P | Field mustard | mitochondrion | 35.56 | 65.04 |
| VIT_03s0017g01660.t01 | Wine grape | plastid | 63.78 | 64.93 |
| PGSC0003DMT400030652 | Potato | cytosol | 58.0 | 63.5 |
| KRH29089 | Soybean | mitochondrion | 62.22 | 63.35 |
| KRH24117 | Soybean | plastid | 60.67 | 61.35 |
| Solyc07g043330.1.1 | Tomato | plastid | 58.89 | 61.34 |
| CDY27670 | Canola | cytosol | 53.33 | 59.41 |
| AT5G41920.1 | Thale cress | cytosol | 53.11 | 59.01 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 52.0 | 37.93 |
| TraesCS5A01G144000.1 | Wheat | plastid | 53.11 | 36.88 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 28.22 | 32.4 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 34.22 | 31.36 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 21.78 | 30.06 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 29.33 | 29.53 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 32.44 | 29.14 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 27.11 | 28.64 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 29.11 | 27.41 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 25.78 | 26.98 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 30.67 | 26.69 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 30.67 | 26.59 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 25.11 | 25.92 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 26.67 | 25.0 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 26.0 | 24.27 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 27.56 | 22.75 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 22.0 | 22.2 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 26.89 | 21.8 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 29.78 | 21.61 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 34.0 | 21.4 |
| TraesCS4A01G430600.1 | Wheat | plastid | 28.22 | 20.45 |
| TraesCS7A01G059000.1 | Wheat | plastid | 28.0 | 20.1 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G200700.1 | EnsemblPlantsGene:TraesCS2A01G200700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0048366 | GO:GO:0090610 |
| InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF35 | PFAM:PF03514 | PFscan:PS50985 |
| SEG:seg | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:173516662..173518014
Molecular Weight (calculated)
48991.6 Da
IEP (calculated)
6.618
GRAVY (calculated)
-0.164
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQGVLSRAP ATDAMKAKQA ASMPDDEEKA RGKRLQLHGS ASEQGLAVAA AGEEGERVAE APETRGLRLL RLLLRCAEAV AMDQLPEAQD MLQEVAELAS
101: PFGSSPERVA AYFGDALCAR VLSSYLGAYS PLALRPLAAA QSRRISSAFQ AYNALSPLVK FSHFTANKAI LQALDGEDHV HVIDLDIMQG LQWPGLFHML
201: ASRPRRPLSL RVTGLGASLD VLEATGRRLA DFAASLGLPF EFQPIDGKIG HVADTTALLG PRHRHREATV VHWMHHCLYD VTGSDVGTVR LLKSLRPKLI
301: TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LRDGAGAAEE ERHAVERQLL GAEIRNIVAV GGPKRTGEVR VERWGDELRR AGFRPVSLAG SPAAQARLLI
401: GMYPWKGYTL VEEDGCLKLG WKDLSLLTAS SWEPTEDDHA AVAEQKRHDS
101: PFGSSPERVA AYFGDALCAR VLSSYLGAYS PLALRPLAAA QSRRISSAFQ AYNALSPLVK FSHFTANKAI LQALDGEDHV HVIDLDIMQG LQWPGLFHML
201: ASRPRRPLSL RVTGLGASLD VLEATGRRLA DFAASLGLPF EFQPIDGKIG HVADTTALLG PRHRHREATV VHWMHHCLYD VTGSDVGTVR LLKSLRPKLI
301: TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LRDGAGAAEE ERHAVERQLL GAEIRNIVAV GGPKRTGEVR VERWGDELRR AGFRPVSLAG SPAAQARLLI
401: GMYPWKGYTL VEEDGCLKLG WKDLSLLTAS SWEPTEDDHA AVAEQKRHDS
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.