Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64484 | Canola | mitochondrion | 53.09 | 87.4 |
| Bra025456.1-P | Field mustard | mitochondrion | 51.85 | 85.37 |
| CDY27670 | Canola | cytosol | 83.21 | 83.42 |
| KRH29089 | Soybean | mitochondrion | 68.15 | 62.44 |
| VIT_03s0017g01660.t01 | Wine grape | plastid | 67.9 | 62.22 |
| PGSC0003DMT400030652 | Potato | cytosol | 62.22 | 61.31 |
| KRH24117 | Soybean | plastid | 65.93 | 60.0 |
| Solyc07g043330.1.1 | Tomato | plastid | 62.47 | 58.56 |
| Os07t0567700-02 | Rice | cytosol | 61.48 | 54.49 |
| Zm00001d021826_P001 | Maize | cytosol | 60.74 | 54.42 |
| KXG36498 | Sorghum | cytosol, plastid | 61.48 | 54.13 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 59.26 | 53.45 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 59.26 | 53.45 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 59.01 | 53.11 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 38.02 | 50.0 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 55.31 | 48.38 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 54.07 | 33.54 |
| AT1G55580.1 | Thale cress | plastid | 31.36 | 28.54 |
| AT1G50420.1 | Thale cress | cytosol | 29.38 | 24.69 |
| AT1G66350.1 | Thale cress | cytosol | 30.62 | 24.27 |
| AT1G14920.1 | Thale cress | nucleus | 31.85 | 24.2 |
| AT3G03450.1 | Thale cress | nucleus | 32.35 | 23.95 |
| AT5G17490.1 | Thale cress | cytosol | 30.86 | 23.9 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 31.6 | 21.81 |
| AT3G50650.1 | Thale cress | cytosol | 28.64 | 21.4 |
| AT5G66770.1 | Thale cress | cytosol | 30.62 | 21.23 |
| AT1G63100.2 | Thale cress | plastid | 31.11 | 19.15 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:834197 | ProteinID:AED94744.1 | ArrayExpress:AT5G41920 | EnsemblPlantsGene:AT5G41920 | RefSeq:AT5G41920 |
| TAIR:AT5G41920 | RefSeq:AT5G41920-TAIR-G | EnsemblPlants:AT5G41920.1 | TAIR:AT5G41920.1 | ProteinID:BAB08425.1 | EMBL:BT029760 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0048366 | GO:GO:0090610 | InterPro:IPR005202 | RefSeq:NP_199007.1 |
| PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF35 | UniProt:Q9FHZ1 | InterPro:TF_GRAS | UniParc:UPI000009CDD1 | SEG:seg | : |
Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
Coordinates
chr5:+:16779643..16781424
Molecular Weight (calculated)
44895.6 Da
IEP (calculated)
5.863
GRAVY (calculated)
-0.130
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.