Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36236 | Canola | cytosol, nucleus, plastid | 83.48 | 88.13 |
| Bra024875.1-P | Field mustard | nucleus | 83.99 | 86.04 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 83.82 | 86.01 |
| CDY64837 | Canola | cytosol | 79.05 | 85.61 |
| CDY04092 | Canola | cytosol | 77.17 | 84.83 |
| Bra017443.1-P | Field mustard | cytosol | 78.88 | 84.64 |
| AT1G14920.1 | Thale cress | nucleus | 74.11 | 81.61 |
| KRH58636 | Soybean | nucleus | 63.71 | 71.51 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 62.69 | 71.18 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 65.93 | 65.59 |
| AT1G66350.1 | Thale cress | cytosol | 53.83 | 61.84 |
| AT3G03450.1 | Thale cress | nucleus | 55.88 | 59.96 |
| AT5G17490.1 | Thale cress | cytosol | 52.64 | 59.08 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 47.02 | 57.62 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 31.69 | 57.06 |
| GSMUA_Achr10P... | Banana | cytosol | 46.0 | 56.49 |
| Os03t0707600-01 | Rice | nucleus | 56.05 | 52.64 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 55.71 | 52.49 |
| EER93592 | Sorghum | cytosol | 56.05 | 52.47 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 55.2 | 52.43 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 55.37 | 52.42 |
| Zm00001d033680_P001 | Maize | nucleus | 56.05 | 52.22 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 55.03 | 52.01 |
| Zm00001d013465_P001 | Maize | cytosol | 55.37 | 52.0 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 44.97 | 51.16 |
| AT5G41920.1 | Thale cress | cytosol | 21.81 | 31.6 |
| AT1G50420.1 | Thale cress | cytosol | 23.68 | 28.84 |
| AT1G55580.1 | Thale cress | plastid | 20.27 | 26.74 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 25.72 | 23.12 |
| AT1G63100.2 | Thale cress | plastid | 25.21 | 22.49 |
| AT5G66770.1 | Thale cress | cytosol | 22.15 | 22.26 |
| AT3G50650.1 | Thale cress | cytosol | 20.1 | 21.77 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | EntrezGene:814686 | ProteinID:AAC67333.1 |
| ProteinID:AEC05469.1 | ArrayExpress:AT2G01570 | EnsemblPlantsGene:AT2G01570 | RefSeq:AT2G01570 | TAIR:AT2G01570 | RefSeq:AT2G01570-TAIR-G |
| EnsemblPlants:AT2G01570.1 | TAIR:AT2G01570.1 | EMBL:AY052239 | EMBL:AY054160 | Unigene:At.24012 | EMBL:BT010467 |
| ncoils:Coil | InterPro:DELLA_N_sf | GO:GO:0000003 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007049 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007267 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009739 |
| GO:GO:0009740 | GO:GO:0009863 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010218 | GO:GO:0010628 |
| GO:GO:0019538 | GO:GO:0030154 | GO:GO:0033206 | GO:GO:0040007 | GO:GO:0042176 | GO:GO:0043565 |
| GO:GO:0044212 | GO:GO:1900033 | GO:GO:1905614 | GO:GO:1905622 | InterPro:IPR005202 | InterPro:IPR038088 |
| RefSeq:NP_178266.1 | PFAM:PF03514 | PFAM:PF12041 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 |
| UniProt:Q9SLH3 | Symbol:RGA1 | SMART:SM01129 | InterPro:TF_DELLA | InterPro:TF_DELLA_N | InterPro:TF_GRAS |
| UniParc:UPI00000A1170 | EMBL:Y11336 | EMBL:Y15194 | SEG:seg | : | : |
Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
Coordinates
chr2:-:255247..257568
Molecular Weight (calculated)
64039.0 Da
IEP (calculated)
5.667
GRAVY (calculated)
-0.218
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.