Factsheet for Bra024875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001477.1-P
Bra003520.1-P
Bra004674.1-P
Bra007722.1-P
Bra008624.1-P
Bra009970.1-P
Bra012532.1-P
Bra013423.1-P
Bra013776.1-P
Bra016891.1-P
Bra021172.1-P
Bra027180.1-P
Bra027588.1-P
Bra028364.1-P
Bra029516.1-P
Bra030040.1-P
Bra034718.1-P
Bra035092.1-P
Bra038128.1-P
Bra039354.1-P
Bra039460.1-P
Bra039533.1-P
Bra039676.1-P
Bra040420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01570.1	Bra030040.1-P	AT1G27370.1	22942378
AT2G01570.1	Bra038128.1-P	AT1G53510.1	21798944
AT2G01570.1	Bra039676.1-P	AT1G53510.1	21798944
AT2G01570.1	Bra035092.1-P	AT1G79110.1	23482857
AT2G01570.1	Bra004674.1-P	AT2G42200.1	22942378
AT2G01570.1	Bra016891.1-P	AT2G42200.1	22942378
AT2G01570.1	Bra039460.1-P	AT3G05120.1	16709201
AT2G01570.1	Bra039460.1-P	AT3G05120.1	17194763
AT2G01570.1	Bra039460.1-P	AT3G05120.1	17416730
AT2G01570.1	Bra039460.1-P	AT3G05120.1	19500306
AT2G01570.1	Bra001477.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra034718.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra039354.1-P	AT3G12920.1	23482857
AT2G01570.1	Bra021172.1-P	AT3G16250.1	21798944
AT2G01570.1	Bra027180.1-P	AT3G16250.1	21798944
AT2G01570.1	Bra003520.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra007722.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra040420.1-P	AT3G63010.1	16709201
AT2G01570.1	Bra003520.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra007722.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra040420.1-P	AT3G63010.1	17194763
AT2G01570.1	Bra003520.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra007722.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra040420.1-P	AT3G63010.1	18827182
AT2G01570.1	Bra003520.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra007722.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra040420.1-P	AT3G63010.1	19429606
AT2G01570.1	Bra003520.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra007722.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra040420.1-P	AT3G63010.1	19500306
AT2G01570.1	Bra029516.1-P	AT4G04770.1	21798944
AT2G01570.1	Bra012532.1-P	AT4G19700.1	23482857
AT2G01570.1	Bra013423.1-P	AT4G19700.1	23482857
AT2G01570.1	Bra013776.1-P	AT4G24210.1	15155881
AT2G01570.1	Bra013776.1-P	AT4G24210.1	15161962
AT2G01570.1	Bra008624.1-P	AT5G16320.1	21798944
AT2G01570.1	Bra009970.1-P	AT5G27320.1	16709201
AT2G01570.1	Bra009970.1-P	AT5G27320.1	17194763
AT2G01570.1	Bra009970.1-P	AT5G27320.1	19500306
AT2G01570.1	Bra027588.1-P	AT5G45100.1	23482857
AT2G01570.1	Bra028364.1-P	AT5G45100.1	23482857
AT2G01570.1	Bra039533.1-P	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17662	Canola	cytosol, nucleus, plastid	99.65	99.83
CDY36236	Canola	cytosol, nucleus, plastid	94.07	96.94
AT2G01570.1	Thale cress	mitochondrion, nucleus	86.04	83.99
Bra017443.1-P	Field mustard	cytosol	78.88	82.63
KRH42544	Soybean	cytosol, nucleus, plastid	63.0	69.83
KRH58636	Soybean	nucleus	63.53	69.6
VIT_01s0011g05260.t01	Wine grape	cytosol	66.67	64.75
Bra039762.1-P	Field mustard	cytosol	53.4	62.7
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	33.16	58.28
Bra013973.1-P	Field mustard	cytosol	53.23	58.1
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	50.96	57.82
GSMUA_Achr8P18250_001	Banana	cytosol	48.17	57.62
GSMUA_Achr10P...	Banana	cytosol	46.07	55.23
EER93592	Sorghum	cytosol	57.59	52.63
Zm00001d033680_P001	Maize	nucleus	57.77	52.54
Os03t0707600-01	Rice	nucleus	57.24	52.48
HORVU4Hr1G006930.1	Barley	nucleus	56.54	52.43
TraesCS4D01G040400.1	Wheat	cytosol	56.89	52.33
TraesCS4A01G271000.1	Wheat	cytosol	56.54	52.26
Zm00001d013465_P001	Maize	cytosol	56.89	52.16
TraesCS4B01G043100.1	Wheat	cytosol	56.37	52.01
GSMUA_Achr1P21300_001	Banana	nucleus	45.72	50.78
Bra007056.1-P	Field mustard	mitochondrion, plastid	20.59	37.34
Bra025456.1-P	Field mustard	mitochondrion	15.53	36.18
Bra014251.1-P	Field mustard	cytosol	25.65	33.03
Bra018848.1-P	Field mustard	cytosol	24.78	32.27
Bra038002.1-P	Field mustard	nucleus, plastid	21.64	27.99
Bra012102.1-P	Field mustard	cytosol	8.2	27.98
Bra027620.1-P	Field mustard	plastid	26.88	24.37
Bra026999.1-P	Field mustard	nucleus, plastid	25.13	23.88

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EnsemblPlantsGene:Bra024875	EnsemblPlants:Bra024875.1
EnsemblPlants:Bra024875.1-P	ncoils:Coil	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:IPR038088	UniProt:M4E7W9	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI00004EAADE
SEG:seg	:	:	:	:	:

Description

AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor

Coordinates

chrA06:+:24018731..24020452

Molecular Weight (calculated)

62515.1 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.203

Length

573 amino acids

Sequence
(BLAST)

001: MKRDLHQFQG PNHGTSIAGS STSSPAVFGK DKMMMVKEEE DDELLGVLGY KVRSSEMAEV ALKLEQLETM MGNAQEDGLA HLATDTVHYN PAELYSWLDN
101: MLTELNPPAA TTGSNALNPE INNNNNNNSF FTGGDLKAIP GNAVCRRSNQ FAFAVDSSSN KRLKPSSSPD SMVTSPSPAG VIGTTVTTVT ESTRPLILVD
201: SQDNGVRLVH ALMACAEAVQ SSNLTLAEAL VKQIGFLAVS QAGAMRKVAT YFAEALARRI YRLSPPQTQI DHSLSDTLQM HFYETCPYLK FAHFTANQAI
301: LEAFEGKKRV HVIDFSMNQG LQWPALMQAL ALREGGPPSF RLTGIGPPAA DNSDHLHEVG CKLAQLAEAI HVEFEYRGFV ANSLADLDAS MLELRPSETE
401: AVAVNSVFEL HKLLGRTGGI EKVFGVVKQI KPVIFTVVEQ ESNHNGPVFL DRFTESLHYY STLFDSLEGA PSSQDKVMSE VYLGKQICNL VACEGPDRVE
501: RHETLSQWSN RFGSSGFAPA HLGSNAFKQA STLLALFNGG EGYRVEENNG CLMLSWHTRP LITTSAWKLS AVH

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.