Factsheet for Bra039460.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013776.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	Bra039762.1-P	AT1G66350.1	16709201
AT3G05120.1	Bra039762.1-P	AT1G66350.1	19500306
AT3G05120.1	Bra017443.1-P	AT2G01570.1	16709201
AT3G05120.1	Bra024875.1-P	AT2G01570.1	16709201
AT3G05120.1	Bra017443.1-P	AT2G01570.1	17194763
AT3G05120.1	Bra024875.1-P	AT2G01570.1	17194763
AT3G05120.1	Bra017443.1-P	AT2G01570.1	17416730
AT3G05120.1	Bra024875.1-P	AT2G01570.1	17416730
AT3G05120.1	Bra017443.1-P	AT2G01570.1	19500306
AT3G05120.1	Bra024875.1-P	AT2G01570.1	19500306
AT3G05120.1	Bra031991.1-P	AT3G03450.1	16709201
AT3G05120.1	Bra031991.1-P	AT3G03450.1	19500306
AT3G05120.1	Bra013776.1-P	AT4G24210.1	16709201
AT3G05120.1	Bra013776.1-P	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27795	Canola	cytosol	86.11	98.55
CDY41936	Canola	cytosol	85.35	97.41
AT3G05120.1	Thale cress	cytosol	74.24	85.22
Bra009970.1-P	Field mustard	cytosol	70.45	80.87
KRH33997	Soybean	cytosol	64.9	74.71
KRG92803	Soybean	cytosol	63.89	73.55
PGSC0003DMT400073501	Potato	cytosol	63.89	72.7
Solyc01g098390.2.1	Tomato	cytosol	63.13	71.63
VIT_14s0030g00440.t01	Wine grape	cytosol	66.41	69.76
GSMUA_Achr3P24930_001	Banana	cytosol	51.26	66.34
GSMUA_Achr5P27430_001	Banana	cytosol	51.26	65.91
GSMUA_Achr8P05910_001	Banana	cytosol	50.51	65.57
GSMUA_Achr10P...	Banana	cytosol	50.76	64.84
Bra003520.1-P	Field mustard	cytosol	58.33	64.53
Bra040420.1-P	Field mustard	cytosol	58.59	64.44
Bra007722.1-P	Field mustard	cytosol	57.07	63.13
GSMUA_Achr6P16090_001	Banana	cytosol	48.74	62.87
GSMUA_Achr5P27450_001	Banana	mitochondrion	52.53	61.54
Zm00001d010308_P001	Maize	cytosol, plastid	54.29	61.43
TraesCS1A01G255100.1	Wheat	cytosol	55.05	61.41
TraesCS1B01G265900.1	Wheat	cytosol	54.8	61.13
HORVU1Hr1G060810.1	Barley	cytosol	54.55	61.02
KXG21982	Sorghum	cytosol	54.55	60.85
TraesCS1D01G254500.1	Wheat	cytosol	54.29	60.73
Os05t0407500-01	Rice	cytosol, nucleus	54.04	60.45
Zm00001d038165_P003	Maize	cytosol	53.28	60.11
Bra026494.1-P	Field mustard	cytosol	32.07	37.91
Bra009691.1-P	Field mustard	cytosol	30.3	35.82
Bra004026.1-P	Field mustard	cytosol	23.99	28.96
Bra008651.1-P	Field mustard	cytosol	23.99	28.61
Bra009207.1-P	Field mustard	cytosol	23.48	28.01
Bra005899.1-P	Field mustard	cytosol	23.48	27.84
Bra004327.1-P	Field mustard	cytosol	23.23	27.54
Bra004326.1-P	Field mustard	cytosol	23.23	27.54
Bra029278.1-P	Field mustard	cytosol	22.22	27.33
Bra035904.1-P	Field mustard	cytosol	22.47	27.13
Bra004924.1-P	Field mustard	cytosol	21.72	26.54
Bra027693.1-P	Field mustard	cytosol	22.47	26.41
Bra038363.1-P	Field mustard	cytosol	22.47	26.41
Bra004925.1-P	Field mustard	cytosol	21.46	26.23
Bra029276.1-P	Field mustard	cytosol	16.41	23.81

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	EnsemblPlantsGene:Bra039460	EnsemblPlants:Bra039460.1
EnsemblPlants:Bra039460.1-P	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009653	GO:GO:0009719
GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009939	GO:GO:0009987	GO:GO:0010331
GO:GO:0010476	GO:GO:0016787	GO:GO:0048444	GO:GO:0048530	GO:GO:1905516	InterPro:IPR029058
InterPro:Lipase_GDXG_put_SER_AS	UniProt:M4FED9	PFAM:PF07859	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227
SUPFAM:SSF53474	UniParc:UPI0002547495	SEG:seg	:	:	:

Description

AT3G05120 (E=2e-167) ATGID1A, GID1A | GID1A (GA INSENSITIVE DWARF1A); hydrolase

Coordinates

chrA05:-:23444564..23446114

Molecular Weight (calculated)

44303.8 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.093

Length

396 amino acids

Sequence
(BLAST)

001: MPVLKLQLNP FDLKFITWFE FSLLDSKVST FRSELFVSTV FVLTKGVSAS MAASDEVNLI DSKTVVPLNT WVLISTFKLS YNLLRRSDGT FNRHLAEYLD
101: RKVTANANPE DGVFSFDVVI DRATSLLSRV YRPAYADQEG GPVSVLDLEK PLDNEIVPVI LFFHGGSFAH SSSNSKIYDT LCRRLVGACS CVVVSVNYRR
201: APESPYPCAY DDGWTALNWV NTRTWLKSKK DSKVRIFLAG DSSGGNIVHN VALKAGEAGI DVLGNVLLNP MFGGEERTES EKRLDGKYFV TVRDRDWYWK
301: AFLPEGEDRE HPACNPFGAR ARSLRGLRFP KSLVVVAGLD LIQDWQLAYA EGLERAGKEV KLVHLEKATI GFYLLPNNSY FHSVMDEIAA FVNAES

Best Arabidopsis Sequence Match ( AT3G05120.1 )
(BLAST)

001: MAASDEVNLI ESRTVVPLNT WVLISNFKVA YNILRRPDGT FNRHLAEYLD RKVTANANPV DGVFSFDVLI DRRINLLSRV YRPAYADQEQ PPSILDLEKP
101: VDGDIVPVIL FFHGGSFAHS SANSAIYDTL CRRLVGLCKC VVVSVNYRRA PENPYPCAYD DGWIALNWVN SRSWLKSKKD SKVHIFLAGD SSGGNIAHNV
201: ALRAGESGID VLGNILLNPM FGGNERTESE KSLDGKYFVT VRDRDWYWKA FLPEGEDREH PACNPFSPRG KSLEGVSFPK SLVVVAGLDL IRDWQLAYAE
301: GLKKAGQEVK LMHLEKATVG FYLLPNNNHF HNVMDEISAF VNAEC

Arabidopsis Description

GID1AGID1A [Source:UniProtKB/TrEMBL;Acc:A0A178VM30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.