Factsheet for Bra003520.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013776.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63010.1	Bra039762.1-P	AT1G66350.1	16709201
AT3G63010.1	Bra039762.1-P	AT1G66350.1	19500306
AT3G63010.1	Bra017443.1-P	AT2G01570.1	16709201
AT3G63010.1	Bra024875.1-P	AT2G01570.1	16709201
AT3G63010.1	Bra017443.1-P	AT2G01570.1	17194763
AT3G63010.1	Bra024875.1-P	AT2G01570.1	17194763
AT3G63010.1	Bra017443.1-P	AT2G01570.1	18827182
AT3G63010.1	Bra024875.1-P	AT2G01570.1	18827182
AT3G63010.1	Bra017443.1-P	AT2G01570.1	19429606
AT3G63010.1	Bra024875.1-P	AT2G01570.1	19429606
AT3G63010.1	Bra017443.1-P	AT2G01570.1	19500306
AT3G63010.1	Bra024875.1-P	AT2G01570.1	19500306
AT3G63010.1	Bra031991.1-P	AT3G03450.1	16709201
AT3G63010.1	Bra031991.1-P	AT3G03450.1	19500306
AT3G63010.1	Bra013776.1-P	AT4G24210.1	16709201
AT3G63010.1	Bra013776.1-P	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67913	Canola	cytosol	99.16	99.16
CDY70667	Canola	cytosol	98.32	98.32
Bra040420.1-P	Field mustard	cytosol	93.85	93.33
Bra007722.1-P	Field mustard	cytosol	90.5	90.5
AT3G63010.1	Thale cress	cytosol	88.83	88.83
VIT_07s0104g00930.t01	Wine grape	cytosol	75.14	78.2
Solyc06g008870.2.1	Tomato	cytosol	73.18	75.94
PGSC0003DMT400009831	Potato	cytosol	73.18	75.94
PGSC0003DMT400056562	Potato	cytosol	72.91	75.65
KRH71503	Soybean	cytosol	71.51	74.85
Solyc09g074270.2.1	Tomato	cytosol	71.79	74.49
KRH31953	Soybean	cytosol	70.39	73.47
KRH67123	Soybean	cytosol	69.27	71.68
Bra009970.1-P	Field mustard	cytosol	68.72	71.3
GSMUA_Achr3P24930_001	Banana	cytosol	57.26	66.99
GSMUA_Achr6P16090_001	Banana	cytosol	56.98	66.45
GSMUA_Achr8P05910_001	Banana	cytosol	55.87	65.57
GSMUA_Achr5P27430_001	Banana	cytosol	56.15	65.26
GSMUA_Achr10P...	Banana	cytosol	55.87	64.52
GSMUA_Achr5P27450_001	Banana	mitochondrion	55.87	59.17
Os05t0407500-01	Rice	cytosol, nucleus	57.82	58.47
Bra039460.1-P	Field mustard	cytosol	64.53	58.33
Zm00001d010308_P001	Maize	cytosol, plastid	56.7	58.0
KXG21982	Sorghum	cytosol	57.26	57.75
Zm00001d038165_P003	Maize	cytosol	56.42	57.55
TraesCS1B01G265900.1	Wheat	cytosol	56.7	57.18
TraesCS1A01G255100.1	Wheat	cytosol	56.7	57.18
HORVU1Hr1G060810.1	Barley	cytosol	56.15	56.78
TraesCS1D01G254500.1	Wheat	cytosol	55.87	56.5
Bra026494.1-P	Field mustard	cytosol	36.03	38.51
Bra009691.1-P	Field mustard	cytosol	34.92	37.31
Bra005899.1-P	Field mustard	cytosol	29.33	31.44
Bra009207.1-P	Field mustard	cytosol	29.05	31.33
Bra004924.1-P	Field mustard	cytosol	27.65	30.56
Bra008651.1-P	Field mustard	cytosol	28.21	30.42
Bra035904.1-P	Field mustard	cytosol	26.82	29.27
Bra029278.1-P	Field mustard	cytosol	25.7	28.57
Bra004026.1-P	Field mustard	cytosol	25.98	28.35
Bra004925.1-P	Field mustard	cytosol	25.14	27.78
Bra027693.1-P	Field mustard	cytosol	24.86	26.41
Bra038363.1-P	Field mustard	cytosol	24.86	26.41
Bra004327.1-P	Field mustard	cytosol	24.58	26.35
Bra004326.1-P	Field mustard	cytosol	24.58	26.35
Bra029276.1-P	Field mustard	cytosol	18.72	24.54

Protein Annotations

EnsemblPlants:Bra003520.1	EnsemblPlants:Bra003520.1-P	EnsemblPlantsGene:Bra003520	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS	PANTHER:PTHR23024	PANTHER:PTHR23024:SF353	PFAM:PF07859	ScanProsite:PS01173
ScanProsite:PS01174	SUPFAM:SSF53474	UniParc:UPI0002541959	UniProt:M4CH37	MapMan:11.6.2.1	:

Description

AT3G63010 (E=4e-190) ATGID1B, GID1B | GID1B (GA INSENSITIVE DWARF1B); hydrolase

Coordinates

chrA07:+:13586691..13587926

Molecular Weight (calculated)

40320.1 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.182

Length

358 amino acids

Sequence
(BLAST)

001: MAAGNEVNLN ECKRIVPLNT WVLISNFKLA YTLLRRPDGS FNRHLAEFLD RKVPPNSFPL DGVFSFDHLD SSTNLLTRIY LPAPLDPSRY GAVDLTEPLS
101: TTEIVPVLVF FHGGSFTHSS ANSAIYDTLC RRLVTICGVV VVSVDYRRSP EHRYPCAYDD GWNALKWVKS RIWLRSGKDS DVYVYLAGDS SGGNIAHNVA
201: VRATNEGVKV LGNILLHPMF GGVERTQSEK RLDGKYFVTV QDRDWYWRAF LPQGEDRDHP ACNPFGPRGQ CLEGVKFPKS LVVVAGLDLV QDWQLAYVDG
301: LKKTGQDVNL LYLKQATIGF YFLPNNDHFR CLMDELKKFV HSIEDDSLSK SCPILLTP

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.