Factsheet for Bra026999.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45974	Canola	plastid	97.18	90.85
Bra027620.1-P	Field mustard	plastid	78.94	75.32
AT1G63100.2	Thale cress	plastid	80.6	73.86
GSMUA_Achr1P16230_001	Banana	cytosol	33.33	56.46
VIT_02s0025g04000.t01	Wine grape	plastid	56.05	51.52
KRH03976	Soybean	mitochondrion, nucleus	53.57	48.28
Solyc08g080400.1.1	Tomato	plastid	54.06	48.01
PGSC0003DMT400007879	Potato	plastid	54.06	48.01
KRH57249	Soybean	plastid	52.74	47.89
GSMUA_Achr7P05850_001	Banana	mitochondrion	45.44	42.15
GSMUA_Achr1P18840_001	Banana	cytosol	42.45	41.69
HORVU7Hr1G010620.1	Barley	cytosol	37.65	40.32
Os06t0127800-01	Rice	plastid	40.13	39.22
TraesCS4A01G430600.1	Wheat	plastid	39.64	38.49
Zm00001d045507_P001	Maize	plastid	38.81	37.99
TraesCS7D01G053600.1	Wheat	plastid	39.47	37.96
TraesCS7A01G059000.1	Wheat	plastid	39.14	37.64
EER87757	Sorghum	mitochondrion	39.3	37.21
Bra025456.1-P	Field mustard	mitochondrion	14.76	36.18
Bra012102.1-P	Field mustard	cytosol	9.78	35.12
Bra007056.1-P	Field mustard	mitochondrion, plastid	18.08	34.49
Bra018848.1-P	Field mustard	cytosol	22.39	30.68
Bra014251.1-P	Field mustard	cytosol	22.22	30.11
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.62	29.81
Bra038002.1-P	Field mustard	nucleus, plastid	21.39	29.12
Bra039762.1-P	Field mustard	cytosol	22.06	27.25
Bra013973.1-P	Field mustard	cytosol	22.39	25.71
Bra024875.1-P	Field mustard	nucleus	23.88	25.13
Bra017443.1-P	Field mustard	cytosol	22.06	24.31
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	19.9	23.76

Protein Annotations

EnsemblPlants:Bra026999.1	EnsemblPlants:Bra026999.1-P	EnsemblPlantsGene:Bra026999	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002542499	UniProt:M4EDY9	MapMan:15.5.12	:	:	:

Description

AT1G63100 (E=9e-259) | scarecrow transcription factor family protein

Coordinates

chrA09:+:7427980..7429791

Molecular Weight (calculated)

67824.9 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.584

Length

603 amino acids

Sequence
(BLAST)

001: MNTQRLDLPC SSSNFPRKET PTNRPLGRSI SLDNTNNNNK AGGCSIKQSI KLTPLATTRG NADGFSWNND NNNRGRKRLM RLAADKEDES CLSRVKRQRG
101: ETGDEHNMGF WFDHFTPASL PFSLTCSGDN DEKLISTQPL PGHPHWVNSV ITELAGLGDK DIESSRPASG SSTSASAESH SFRHRVPVPT NGSRHPYSQH
201: GGGSTERRTI ENINNNNNHR NDTQRDLELV NLLTGCLEAI RTRNIAAINH FIARSGELAS PRGTTPMTRL IAYYTEALAL RVARMWPHIF HITPPRDFED
301: ESANALRFLN QVTPIPKFIH YTANSMLLRA FQGKERVHII DFDIKQGLQW PSFFQSLASR PIPPRHVRIT GVGESKHELN ETGDRLHGFA EAMHLQFEFH
401: PVVDRLEDVR LWMLHVKEGE AVAVNCVSQM HKTLYDGTGA AVRDFAGLVR STNPVAVVIA EQEAEHNSTQ LETRVFNSLK YYSAGFDVMH KRLGADSLMR
501: VKIEEVLFGR EIRNIVACEG SHRQERHVGF GEWRRMMEQL GFRSLGVSER EVLQSKMLLR MYGDGDEEFF NVERSDEDGG GVTLRWLDQP LYTVSAWSGG
601: GSS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.