CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045507_P001	Maize	plastid	89.33	92.37
Os06t0127800-01	Rice	plastid	78.34	80.88
HORVU7Hr1G010620.1	Barley	cytosol	69.23	78.33
TraesCS7D01G053600.1	Wheat	plastid	74.1	75.28
TraesCS4A01G430600.1	Wheat	plastid	73.16	75.04
TraesCS7A01G059000.1	Wheat	plastid	73.63	74.8
GSMUA_Achr1P16230_001	Banana	cytosol	33.59	60.11
GSMUA_Achr7P05850_001	Banana	mitochondrion	46.31	45.38
GSMUA_Achr1P18840_001	Banana	cytosol	42.39	43.97
VIT_02s0025g04000.t01	Wine grape	plastid	43.33	42.07
Solyc08g080400.1.1	Tomato	plastid	43.33	40.65
PGSC0003DMT400007879	Potato	plastid	43.33	40.65
AT1G63100.2	Thale cress	plastid	40.66	39.36
Bra026999.1-P	Field mustard	nucleus, plastid	37.21	39.3
CDY49199	Canola	plastid	38.3	38.61
KRH57249	Soybean	plastid	40.19	38.55
Bra027620.1-P	Field mustard	plastid	38.15	38.45
CDY47352	Canola	plastid	38.15	38.15
CDY45974	Canola	plastid	38.15	37.67
KRH03976	Soybean	mitochondrion, nucleus	39.56	37.67
CDY70213	Canola	plastid	37.83	37.48
OQU87235	Sorghum	extracellular	15.38	33.22
OQU83473	Sorghum	cytosol	21.98	33.18
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.58	32.95
EES02045	Sorghum	cytosol, plastid	20.88	28.98
KXG22896	Sorghum	cytosol, plasma membrane	23.7	28.65
KXG36498	Sorghum	cytosol, plastid	20.41	28.26
KXG29713	Sorghum	cytosol	17.27	27.71
EES01920	Sorghum	cytosol	22.29	26.44
OQU81603	Sorghum	cytosol	14.29	25.42
EES09233	Sorghum	cytosol	19.31	25.26
EES16518	Sorghum	cytosol	17.43	24.67
OQU77884	Sorghum	plasma membrane	17.11	23.96
EES18409	Sorghum	cytosol	18.52	23.94
OQU76691	Sorghum	cytosol, extracellular	17.58	23.93
OQU77885	Sorghum	cytosol	17.9	23.65
EER93592	Sorghum	cytosol	22.92	23.29
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	20.41	23.26
KXG23987	Sorghum	cytosol	18.84	22.86
KXG22822	Sorghum	mitochondrion	20.25	22.36
OQU82754	Sorghum	plastid	24.65	22.08

Protein Annotations

MapMan:15.5.12	EntrezGene:8068371	UniProt:C5Z374	EnsemblPlants:EER87757	ProteinID:EER87757	ProteinID:EER87757.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009987	GO:GO:0043565	GO:GO:1900459	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	EnsemblPlantsGene:SORBI_3010G017400	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI0009DC821E
RefSeq:XP_002436390.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:1413401..1415917

Molecular Weight (calculated)

67529.4 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.248

Length

637 amino acids

Sequence
(BLAST)

001: MEVLLGFAAR RCLGGRSAAA RALLQRMSTA QRFDILPYGF SKRATNRGDG PGASAAPRVA AADARTGGGG TCSFRAHPAP PVTQAVSWGA KPEPGGNGAG
101: AVWERSRAVK RAHEEDTGEE YSGPVVRAKR TRRGGDGDEV WLHRSIAGTV QAAGSGDGEE AEEEKVFLVP SAAAFPHGMS AAAGPSLAAA KKEEFSKSPS
201: NSPASSGGTD GGSSAAVPRP EQLHAHNGAP AQRVEAMELV VALTACADSL AACNHDAANY YLARLGEMAS PAGPTPMHRV AAYFAEALAL RVVRMWPHVF
301: DVAPPRELTD GAVADDDDAT ALRVLNAVTP IPRFLHFTLN ERVLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLATRASGP PAHVRITGVG ESRQELQETG
401: ARLGRVAAAL GLAFEFHAVV DRLEDVRLWM LHVKRGECVA VNCVLAAHRL LRDETGAAIA DFLGLARSTG AAILLLGEHE DALNSGRWEA RFARALRYYA
501: AAFDAVDAAG LADTSPARAK AEEMFAREIR NAVAFEAGDR FERHETFAGW RRRMQEGGFQ NAGIGEREAM QGRMIARMFA PGNYSVQAQG DGEGLTLRWM
601: DQAMYTVSAW TPISDGGGGG STVSASVSTT ASHSQQS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.