Factsheet for GSMUA_Achr1P18840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P16230_001	Banana	cytosol	41.86	72.19
GSMUA_Achr7P05850_001	Banana	mitochondrion	75.73	71.54
VIT_02s0025g04000.t01	Wine grape	plastid	53.09	49.7
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	68.73	48.96
Solyc08g080400.1.1	Tomato	plastid	51.79	46.83
PGSC0003DMT400007879	Potato	plastid	51.79	46.83
HORVU7Hr1G010620.1	Barley	cytosol	42.51	46.36
Os06t0127800-01	Rice	plastid	46.42	46.19
KRH57249	Soybean	plastid	49.35	45.63
KRH03976	Soybean	mitochondrion, nucleus	48.86	44.84
TraesCS4A01G430600.1	Wheat	plastid	44.95	44.44
Zm00001d045507_P001	Maize	plastid	43.97	43.83
TraesCS7D01G053600.1	Wheat	plastid	44.63	43.7
TraesCS7A01G059000.1	Wheat	plastid	44.63	43.7
Bra026999.1-P	Field mustard	nucleus, plastid	41.69	42.45
EER87757	Sorghum	mitochondrion	43.97	42.39
CDY70213	Canola	plastid	44.14	42.15
CDY49199	Canola	plastid	43.32	42.09
Bra027620.1-P	Field mustard	plastid	43.16	41.93
CDY45974	Canola	plastid	43.81	41.71
CDY47352	Canola	plastid	43.0	41.44
AT1G63100.2	Thale cress	plastid	44.3	41.34
GSMUA_AchrUn_...	Banana	cytosol	19.54	31.41
GSMUA_Achr7P16880_001	Banana	cytosol	19.06	30.87
GSMUA_Achr1P19470_001	Banana	nucleus	19.06	30.55
GSMUA_Achr1P09360_001	Banana	cytosol	17.75	29.54
GSMUA_Achr8P09690_001	Banana	cytosol	20.85	28.7
GSMUA_Achr8P01180_001	Banana	nucleus	20.52	27.57
GSMUA_Achr8P18250_001	Banana	cytosol	21.5	27.56
GSMUA_Achr10P...	Banana	cytosol	21.17	27.2
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	20.36	26.43
GSMUA_Achr11P...	Banana	plastid	23.62	25.26
GSMUA_Achr6P17870_001	Banana	cytosol	18.24	25.11
GSMUA_Achr10P...	Banana	nucleus	17.43	24.37
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.21	24.35
GSMUA_AchrUn_...	Banana	cytosol	20.85	23.93
GSMUA_Achr3P30530_001	Banana	cytosol	22.15	23.57
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	23.29	23.4
GSMUA_Achr8P09400_001	Banana	cytosol	25.57	23.36
GSMUA_Achr6P20830_001	Banana	nucleus	23.13	23.28
GSMUA_Achr1P21300_001	Banana	nucleus	19.22	22.87
GSMUA_Achr4P07320_001	Banana	cytosol	20.68	22.64
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	24.1	20.93
GSMUA_Achr11P...	Banana	cytosol	21.99	12.25

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18840_001	EnsemblPlants:GSMUA_Achr1T18840_001	EnsemblPlantsGene:GSMUA_Achr1G18840_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002953601	UniProt:M0S142	MapMan:15.5.12	:	:	:

Description

DELLA protein SLR1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18840_001]

Coordinates

chr1:+:14088038..14089882

Molecular Weight (calculated)

67552.8 Da

IEP (calculated)

5.690

GRAVY (calculated)

-0.375

Length

614 amino acids

Sequence
(BLAST)

001: MLAGCPLTLP SPGIDASVQL QPYHFQLQEK KHCPPQQTMG TQRLDLPCGF SSRKDPLRAV LSGETPSAEA PGTSCSFRQH PVTHSSSSSL VAQAAAPWGR
101: TVEAIDGRNG GPWEQRRSSK RLHDRISCGD YRAKRTRTVD VEADAWPSPS TEEPPLVEAE EERVFLVPNA ASFPLPAFSG HDRSRSETSS SSGAFICSGN
201: TATSDGPRLP PASGFAGFGG EGEGIQTEQQ GLELVSLLTS CTESMSSSNY EAMSFFLARL GEMATPFGTP LHRVVAYFTE ALALRAAKLL PHIFSVAPPK
301: TITDPTDNDD DAIALLLLDC VSPIPKFLHF TLNERLLKAF EGKDRVHIID FDVKQGLQWP ALFQSLASRP NPPGHVRITG IGECGPHLQQ AGVRLAGIAE
401: SLDLPFEFHP VVDRLEDIRL WMLHVKREEC VAVNCALTMH KTLYDESGKA LTDLLGLIRS TRPEIVVMAE QEAKHNEPTW ETRLAGSLNY YASVFDSMEH
501: ALPVDSQARI KIEEAFAKEI RNIVAREGSE RTERHESFDR WRKLMQDGGF RCLGIGEGEQ SRMIPRMYSC ENYSIHEQGE GDGLTLKWLH QPLYTVSAWA
601: PADVTDGPST SQPN

Best Arabidopsis Sequence Match ( AT1G63100.1 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.