Factsheet for GSMUA_Achr7P16880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P09360_001	Banana	cytosol	76.78	78.86
GSMUA_Achr1P19470_001	Banana	nucleus	68.07	67.36
GSMUA_AchrUn_...	Banana	cytosol	65.96	65.44
VIT_19s0015g01930.t01	Wine grape	cytosol	55.94	51.33
TraesCS6A01G159500.1	Wheat	cytosol	48.02	46.43
Solyc07g066250.1.1	Tomato	nucleus	52.24	46.26
PGSC0003DMT400057265	Potato	nucleus, plastid	52.24	45.94
TraesCS6B01G191800.1	Wheat	cytosol	47.23	45.32
TraesCS6D01G153000.1	Wheat	cytosol	46.7	44.81
TraesCS7D01G379200.1	Wheat	cytosol	48.81	43.53
TraesCS7A01G382800.1	Wheat	cytosol	48.55	43.19
HORVU7Hr1G091000.1	Barley	cytosol	48.28	42.96
TraesCS7B01G285500.1	Wheat	cytosol	48.28	42.66
KXG29713	Sorghum	cytosol	43.8	41.81
Os06t0610350-01	Rice	cytosol	48.28	41.5
CDY50028	Canola	nucleus, plastid	45.65	41.49
CDY54362	Canola	plastid	45.91	41.33
HORVU6Hr1G033280.1	Barley	cytosol	47.76	40.58
Zm00001d046783_P001	Maize	mitochondrion	48.28	40.13
Os02t0197300-00	Rice	cytosol	46.7	39.69
Bra038002.1-P	Field mustard	nucleus, plastid	46.17	39.5
OQU76691	Sorghum	cytosol, extracellular	48.28	39.1
Zm00001d015815_P001	Maize	cytosol	41.95	38.22
AT1G55580.1	Thale cress	plastid	44.85	38.2
GSMUA_Achr1P16230_001	Banana	cytosol	26.12	27.81
GSMUA_Achr8P09690_001	Banana	cytosol	31.66	26.91
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.79	24.35
GSMUA_Achr8P01180_001	Banana	nucleus	29.29	24.29
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	30.08	24.1
GSMUA_Achr6P17870_001	Banana	cytosol	27.18	23.09
GSMUA_AchrUn_...	Banana	cytosol	32.19	22.8
GSMUA_Achr10P...	Banana	nucleus	26.39	22.78
GSMUA_Achr8P18250_001	Banana	cytosol	27.97	22.13
GSMUA_Achr3P30530_001	Banana	cytosol	32.19	21.14
GSMUA_Achr4P07320_001	Banana	cytosol	30.34	20.5
GSMUA_Achr10P...	Banana	cytosol	24.54	19.46
GSMUA_Achr7P05850_001	Banana	mitochondrion	32.72	19.08
GSMUA_Achr1P18840_001	Banana	cytosol	30.87	19.06
GSMUA_Achr6P20830_001	Banana	nucleus	30.61	19.02
GSMUA_Achr11P...	Banana	plastid	28.5	18.82
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	28.5	17.68
GSMUA_Achr8P09400_001	Banana	cytosol	30.34	17.11
GSMUA_Achr1P21300_001	Banana	nucleus	22.43	16.47
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	29.02	15.56
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	32.45	14.27
GSMUA_Achr11P...	Banana	cytosol	32.98	11.34

Protein Annotations

MapMan:15.5.12	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	EnsemblPlantsGene:GSMUA_Achr7G16880_001	EnsemblPlants:GSMUA_Achr7P16880_001	EnsemblPlants:GSMUA_Achr7T16880_001
InterPro:IPR005202	UniProt:M0TI75	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF2
InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI000295DE96	SEG:seg	:	:

Description

Putative Scarecrow-like protein 18 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16880_001]

Coordinates

chr7:-:17644093..17645307

Molecular Weight (calculated)

42112.9 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.204

Length

379 amino acids

Sequence
(BLAST)

001: MLSSLKTDGG GAQDTHLHPD PHHPNPEPGL ISSTVNARQL LISCAELVHC GDLPAAERAI SILTAAAAPY GDSIDRLIRQ FCRALSVRIG RVSPSAASLG
101: SLQSSYLLFN QMTPFLRFSH LTANQAILEA AIADRSDPGD PPFIRISGTG SSLETLQRTG DRLRNFAHSL GLEFQFHPLL LPPSVHSTNT SYNFTPSCLQ
201: FHPSETLVVN CVLFLHKLQR EDGNDDGSRK LQAFLRTIRV MNPSVVTVAE RETVHSSRSF MQRFVEALDY YTAVFEALEA TLPPTSEERM AVEQVWLGRE
301: IESIVGGEGD GRRERHERWD SLMRDAGFSS LAPSTFAVSQ ARLLLRLHYP SEGYQLQLVR DSFLLGWHSR HLFSVSSWH

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.