Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G191800.1 | Wheat | cytosol | 97.45 | 96.71 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 96.43 | 95.7 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 95.41 | 83.86 |
| KXG29713 | Sorghum | cytosol | 74.74 | 73.8 |
| Zm00001d015815_P001 | Maize | cytosol | 72.19 | 68.03 |
| Os02t0197300-00 | Rice | cytosol | 77.3 | 67.94 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 65.82 | 60.56 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 48.21 | 49.35 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.45 | 48.69 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 46.43 | 48.02 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 45.15 | 47.97 |
| VIT_19s0015g01930.t01 | Wine grape | cytosol | 46.94 | 44.55 |
| Solyc07g066250.1.1 | Tomato | nucleus | 44.9 | 41.12 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 45.15 | 41.07 |
| CDY50028 | Canola | nucleus, plastid | 40.82 | 38.37 |
| CDY54362 | Canola | plastid | 40.82 | 38.0 |
| Bra038002.1-P | Field mustard | nucleus, plastid | 40.82 | 36.12 |
| AT1G55580.1 | Thale cress | plastid | 40.05 | 35.28 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 24.49 | 29.45 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 33.16 | 29.08 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 32.4 | 28.22 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 28.32 | 25.46 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 27.3 | 24.88 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 30.87 | 24.64 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 31.38 | 24.55 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 29.59 | 24.17 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 28.83 | 23.44 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 31.63 | 22.75 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 33.42 | 21.23 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 25.51 | 20.92 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 23.21 | 20.4 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 26.79 | 20.23 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 26.53 | 20.12 |
| TraesCS4A01G430600.1 | Wheat | plastid | 31.38 | 19.81 |
| TraesCS5A01G144000.1 | Wheat | plastid | 32.65 | 19.75 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 27.55 | 19.46 |
| TraesCS7A01G059000.1 | Wheat | plastid | 31.12 | 19.46 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 30.1 | 19.03 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 34.69 | 19.02 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G159500.1 | EnsemblPlantsGene:TraesCS6A01G159500 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF49 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr6A:-:151527234..151528412
Molecular Weight (calculated)
41303.0 Da
IEP (calculated)
5.569
GRAVY (calculated)
0.009
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDPPEPDDD AARPPRAPVA AASPRGLVLA CADLLHRGDL DGARRAAGAV LSGADPRGDA ADRLAHHFAR ALALRADEGR SSVGPLGVGV APASSAVHLA
101: YNKIAPFLRF AHLTANQAIL EAAAGARRVH IVDLDAAHGV QWPPLLQAIG DRADAAVGPP EVRITGAGPD LDVLLRTGDR LRAFASSLNL PFRFHPLLLP
201: CTAQLAADPA ACLELHPDET LAVNCVLFLH RLSGDGELTA FLRWVRSMNP AVVTIAEREG EAGRGEDDDE LPRRVAAAMD FYSAVFDALE ATMPPGSAER
301: LAVEQEILGT EIDAVVAGPG SGGGRPRSFE AWTAAARAAG LSPWPASTFA VSQARLLLRL HYPSEGYAAE EARGACFLGW QTRTLMSVSS WH
101: YNKIAPFLRF AHLTANQAIL EAAAGARRVH IVDLDAAHGV QWPPLLQAIG DRADAAVGPP EVRITGAGPD LDVLLRTGDR LRAFASSLNL PFRFHPLLLP
201: CTAQLAADPA ACLELHPDET LAVNCVLFLH RLSGDGELTA FLRWVRSMNP AVVTIAEREG EAGRGEDDDE LPRRVAAAMD FYSAVFDALE ATMPPGSAER
301: LAVEQEILGT EIDAVVAGPG SGGGRPRSFE AWTAAARAAG LSPWPASTFA VSQARLLLRL HYPSEGYAAE EARGACFLGW QTRTLMSVSS WH
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
Arabidopsis Description
SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.