Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G053600.1 | Wheat | plastid | 96.46 | 95.53 |
| TraesCS7A01G059000.1 | Wheat | plastid | 95.81 | 94.9 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 85.19 | 93.96 |
| Os06t0127800-01 | Rice | plastid | 76.33 | 76.82 |
| Zm00001d045507_P001 | Maize | plastid | 74.72 | 75.32 |
| EER87757 | Sorghum | mitochondrion | 75.04 | 73.16 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 33.49 | 58.43 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 48.15 | 46.0 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 44.44 | 44.95 |
| VIT_02s0025g04000.t01 | Wine grape | plastid | 45.09 | 42.68 |
| PGSC0003DMT400007879 | Potato | plastid | 44.61 | 40.8 |
| Solyc08g080400.1.1 | Tomato | plastid | 44.44 | 40.65 |
| Bra026999.1-P | Field mustard | nucleus, plastid | 38.49 | 39.64 |
| KRH57249 | Soybean | plastid | 42.35 | 39.61 |
| CDY49199 | Canola | plastid | 40.1 | 39.4 |
| Bra027620.1-P | Field mustard | plastid | 39.94 | 39.24 |
| CDY47352 | Canola | plastid | 39.94 | 38.93 |
| KRH03976 | Soybean | mitochondrion, nucleus | 41.87 | 38.86 |
| CDY45974 | Canola | plastid | 40.26 | 38.76 |
| AT1G63100.2 | Thale cress | plastid | 41.06 | 38.75 |
| CDY70213 | Canola | plastid | 39.94 | 38.57 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 47.18 | 33.99 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 19.81 | 31.38 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 16.26 | 30.98 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 21.09 | 30.05 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 21.09 | 29.31 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 22.87 | 28.34 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 21.74 | 28.24 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 20.45 | 28.22 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 23.51 | 28.13 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 23.19 | 27.85 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 19.0 | 27.7 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 21.42 | 27.59 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 18.68 | 26.98 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 20.77 | 26.27 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 20.13 | 26.04 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 21.74 | 24.77 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 24.32 | 24.47 |
| TraesCS5A01G144000.1 | Wheat | plastid | 24.8 | 23.77 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 23.67 | 23.71 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 20.77 | 23.24 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 16.26 | 22.65 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 24.15 | 20.98 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G430600.1 | EnsemblPlantsGene:TraesCS4A01G430600 | InterPro:IPR005202 | InterPro:Scarecrow-like_28 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF16 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr4A:+:701884824..701886689
Molecular Weight (calculated)
65318.7 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.228
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAGCSSLSS RHQMSTAQRL PCGFSKRAGR GDSAVPGAAP GADGRGGNGT CSFRPHPAPP VTQAVSWGAK PEPSVGGDWE RRGGAVKRAH EEAAAEEEYG
101: APAARAKRTR MGGDGDEVWF HQSIAGPAAL MQVAAGEGGG EEEEVAEEQK VFLVPSAAAF PHGMAAAAGP SSLAAAKQEE FSKSPSHSSS SSGTDGGSSA
201: VLPVEPAGVR GFVVPEAERE ALELVGALTA CAEALAGCQH DAANYYLARL GETASPSGPT PLHRVAACFA EALALRAANM WPHVFDVTPP RELTDGAFHD
301: DDDALALRVL NSVTPIPRFL HFTLNERLLR AFDGHDRVHI IDFDIKQGLQ WPSLLQSLAA RTPQPPAHVR ITGVGSSRQE LQDTGARLAH VAAGLGLAFE
401: FHAVVDRLED VRLWMLHVKR GERVAVNCVL AAHRLLRDET GGALSDFLGL VRSTGAAVLL LGEHEAAGLN AGRWEARFAR ALQHYAAAFD AVGAAGLPPA
501: SAARAKAEEM FAREIRNAVA FEGSDRSERH ESFAGWRRRM EDGGFRSAGI GHREAMQGRM IARMFAPGKY GVHPQGDGEG LTLRWLDTPL YTVTAWAPAG
601: DGAGGSATVS ASTTASHSLQ S
101: APAARAKRTR MGGDGDEVWF HQSIAGPAAL MQVAAGEGGG EEEEVAEEQK VFLVPSAAAF PHGMAAAAGP SSLAAAKQEE FSKSPSHSSS SSGTDGGSSA
201: VLPVEPAGVR GFVVPEAERE ALELVGALTA CAEALAGCQH DAANYYLARL GETASPSGPT PLHRVAACFA EALALRAANM WPHVFDVTPP RELTDGAFHD
301: DDDALALRVL NSVTPIPRFL HFTLNERLLR AFDGHDRVHI IDFDIKQGLQ WPSLLQSLAA RTPQPPAHVR ITGVGSSRQE LQDTGARLAH VAAGLGLAFE
401: FHAVVDRLED VRLWMLHVKR GERVAVNCVL AAHRLLRDET GGALSDFLGL VRSTGAAVLL LGEHEAAGLN AGRWEARFAR ALQHYAAAFD AVGAAGLPPA
501: SAARAKAEEM FAREIRNAVA FEGSDRSERH ESFAGWRRRM EDGGFRSAGI GHREAMQGRM IARMFAPGKY GVHPQGDGEG LTLRWLDTPL YTVTAWAPAG
601: DGAGGSATVS ASTTASHSLQ S
001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN
Arabidopsis Description
SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.