Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G122000.1 | Wheat | plastid | 99.68 | 90.57 |
| TraesCS4B01G124000.1 | Wheat | plastid | 98.06 | 89.1 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 69.21 | 81.02 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 40.03 | 78.16 |
| Os11t0124300-01 | Rice | nucleus, plastid | 81.52 | 77.27 |
| Os12t0122000-01 | Rice | plastid | 82.33 | 76.97 |
| TraesCS5A01G144000.1 | Wheat | plastid | 80.55 | 76.7 |
| Zm00001d052380_P001 | Maize | plastid | 79.9 | 73.8 |
| OQU82754 | Sorghum | plastid | 80.39 | 69.76 |
| Zm00001d005029_P001 | Maize | plastid | 75.85 | 69.03 |
| GSMUA_Achr11P... | Banana | plastid | 59.64 | 64.11 |
| CDX78219 | Canola | nucleus, plastid | 57.05 | 58.37 |
| CDX73496 | Canola | nucleus, plastid | 57.86 | 57.4 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 61.91 | 56.85 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 57.7 | 54.52 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 37.93 | 52.0 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 59.16 | 51.63 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 62.72 | 49.49 |
| Solyc10g074680.1.1 | Tomato | cytosol | 61.43 | 45.88 |
| PGSC0003DMT400043358 | Potato | cytosol | 61.26 | 45.76 |
| KRH40615 | Soybean | nucleus, plastid | 58.35 | 43.74 |
| KRH00551 | Soybean | nucleus, plastid | 58.67 | 42.99 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 27.55 | 34.62 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 17.99 | 34.05 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 24.47 | 33.78 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 21.23 | 33.42 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 21.88 | 31.69 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 21.88 | 30.96 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 24.31 | 29.94 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 21.88 | 28.24 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 22.04 | 28.22 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 19.61 | 28.14 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 23.66 | 28.13 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.72 | 27.92 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 22.85 | 27.27 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 23.34 | 26.42 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 25.93 | 25.81 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 18.15 | 25.11 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 28.36 | 24.48 |
| TraesCS4A01G430600.1 | Wheat | plastid | 24.47 | 24.32 |
| TraesCS7A01G059000.1 | Wheat | plastid | 24.47 | 24.08 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 21.07 | 23.42 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G191300.1 | EnsemblPlantsGene:TraesCS4A01G191300 | InterPro:IPR005202 | InterPro:TF_GRAS | ncoils:Coil | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 |
Description
No Description!
Coordinates
chr4A:-:470687270..470689755
Molecular Weight (calculated)
65962.6 Da
IEP (calculated)
6.424
GRAVY (calculated)
-0.149
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRKRPAPDV DLPPPRRHVT GDLSDVTAAT GGAAPPQQLP SAVAGSAQLP ALPMQLPAFG GHLQAPVPAM DVVVAPQVAT EVNVNNDSTA WVDGIIRDII
101: GSSGAAVSVA QLIHNVREII HPCNPGLASL LELRLRSLLA SDLVQHPPPP PPLPPHHPPS LLPGAGGNTI LSAPPVPALP PPPPPDKRRR EEEQQNPPPQ
201: SPKPPPSAEE TAAAAAAAAA AASAALKERK EEQRRRQRDE EGLHLLTLLL QCAESVNSDD LDEAQRALLE IAELATPFGT STQRVAAYFA EAMSARLVSS
301: CLGLYAPLPN ASSPAASRLV NSRVAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IVDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA
401: LEATGKRLSD FAHTLGLPFE FYPVAGKAGN LDPEKLGVDT RRREAVAVHW LHHSLYDVTG NDSNTLNLIQ RLAPKVVTMV EQDLSHSGSF LARFVEAIHY
501: YSALFDSLDA SYSEDSSERH VVEQQLLARE IRNVLAVGGP ARTGDIKFGN WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGTLKLGWKD
601: LCLLTASAWR PFQALGR
101: GSSGAAVSVA QLIHNVREII HPCNPGLASL LELRLRSLLA SDLVQHPPPP PPLPPHHPPS LLPGAGGNTI LSAPPVPALP PPPPPDKRRR EEEQQNPPPQ
201: SPKPPPSAEE TAAAAAAAAA AASAALKERK EEQRRRQRDE EGLHLLTLLL QCAESVNSDD LDEAQRALLE IAELATPFGT STQRVAAYFA EAMSARLVSS
301: CLGLYAPLPN ASSPAASRLV NSRVAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IVDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA
401: LEATGKRLSD FAHTLGLPFE FYPVAGKAGN LDPEKLGVDT RRREAVAVHW LHHSLYDVTG NDSNTLNLIQ RLAPKVVTMV EQDLSHSGSF LARFVEAIHY
501: YSALFDSLDA SYSEDSSERH VVEQQLLARE IRNVLAVGGP ARTGDIKFGN WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGTLKLGWKD
601: LCLLTASAWR PFQALGR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.