Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G434400.1 | Wheat | nucleus | 94.01 | 94.01 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 91.62 | 92.17 |
| TraesCS3B01G470000.1 | Wheat | nucleus | 84.43 | 84.43 |
| TraesCS4B01G351500.1 | Wheat | nucleus | 77.84 | 79.27 |
| Os01t0922800-01 | Rice | nucleus | 73.05 | 74.39 |
| Solyc10g017640.1.1 | Tomato | nucleus | 24.55 | 67.21 |
| TraesCS1B01G214600.1 | Wheat | nucleus | 24.55 | 66.13 |
| OQU86329 | Sorghum | nucleus | 64.07 | 62.57 |
| Zm00001d039913_P002 | Maize | nucleus | 62.87 | 60.34 |
| KRH48297 | Soybean | nucleus | 28.14 | 52.81 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 38.32 | 50.79 |
| TraesCS7B01G158900.1 | Wheat | nucleus | 42.52 | 32.72 |
| KRH00625 | Soybean | nucleus | 37.13 | 29.67 |
| KRH40554 | Soybean | nucleus | 37.13 | 29.38 |
| Bra000393.1-P | Field mustard | nucleus | 35.93 | 28.17 |
| CDY60689 | Canola | nucleus | 35.93 | 28.17 |
| CDY53886 | Canola | nucleus | 35.93 | 28.17 |
| AT2G45660.1 | Thale cress | nucleus | 35.33 | 27.57 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 36.53 | 27.48 |
| CDY69077 | Canola | nucleus | 34.73 | 27.23 |
| CDY37054 | Canola | nucleus | 34.73 | 27.23 |
| CDY27368 | Canola | nucleus | 34.73 | 27.23 |
| CDX74755 | Canola | nucleus | 34.73 | 27.23 |
| Bra039324.1-P | Field mustard | nucleus | 34.73 | 27.23 |
| Bra004928.1-P | Field mustard | nucleus | 34.73 | 27.23 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 35.33 | 27.06 |
| PGSC0003DMT400026576 | Potato | nucleus | 34.13 | 26.64 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 40.12 | 25.97 |
| PGSC0003DMT400000028 | Potato | nucleus | 34.73 | 25.89 |
| KRH65189 | Soybean | nucleus | 35.33 | 24.89 |
| KRH48299 | Soybean | nucleus | 6.59 | 8.03 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS3B01G469700 | EnsemblPlants:TraesCS3B01G469700.1 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr3B:-:716709791..716741846
Molecular Weight (calculated)
18519.7 Da
IEP (calculated)
10.677
GRAVY (calculated)
-0.951
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELAVLC DAEVALLVFS PAGKLYEYST SSIEGTYDRY QRFAGAGTNV NGGDASSNND GDPSNIQPRL
101: KEIASWSLQN NADDSDANKL EKLEKLLTDA LRNTKSKKML AQQNSGSSTR SGENSNGPRG QKKRGRT
101: KEIASWSLQN NADDSDANKL EKLEKLLTDA LRNTKSKKML AQQNSGSSTR SGENSNGPRG QKKRGRT
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.