Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU86329 | Sorghum | nucleus | 85.63 | 87.13 |
| Zm00001d042315_P001 | Maize | nucleus | 30.46 | 75.71 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 63.79 | 66.47 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 63.22 | 65.87 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 59.2 | 64.78 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 59.2 | 64.78 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 60.92 | 63.47 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 60.92 | 63.47 |
| TraesCS3B01G470000.1 | Wheat | nucleus | 60.92 | 63.47 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 60.34 | 63.25 |
| TraesCS3B01G469700.1 | Wheat | nucleus | 60.34 | 62.87 |
| TraesCS4B01G351500.1 | Wheat | nucleus | 59.2 | 62.8 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 59.77 | 62.28 |
| Zm00001d047355_P001 | Maize | nucleus | 26.44 | 61.33 |
| Solyc10g017640.1.1 | Tomato | nucleus | 21.26 | 60.66 |
| Zm00001d031625_P001 | Maize | nucleus | 27.59 | 60.0 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 56.32 | 59.04 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 62.07 | 53.47 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 62.64 | 52.66 |
| KRH48297 | Soybean | nucleus | 26.44 | 51.69 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 33.33 | 46.03 |
| KRH40554 | Soybean | nucleus | 36.21 | 29.86 |
| KRH00625 | Soybean | nucleus | 35.63 | 29.67 |
| Bra000393.1-P | Field mustard | nucleus | 32.76 | 26.76 |
| CDY69077 | Canola | nucleus | 32.76 | 26.76 |
| CDY60689 | Canola | nucleus | 32.76 | 26.76 |
| CDY53886 | Canola | nucleus | 32.76 | 26.76 |
| CDY37054 | Canola | nucleus | 32.76 | 26.76 |
| CDY27368 | Canola | nucleus | 32.76 | 26.76 |
| CDX74755 | Canola | nucleus | 32.76 | 26.76 |
| Bra039324.1-P | Field mustard | nucleus | 32.76 | 26.76 |
| Bra004928.1-P | Field mustard | nucleus | 32.76 | 26.76 |
| Zm00001d027425_P001 | Maize | nucleus | 35.06 | 26.75 |
| AT2G45660.1 | Thale cress | nucleus | 32.76 | 26.64 |
| Zm00001d048474_P001 | Maize | nucleus | 34.48 | 25.86 |
| PGSC0003DMT400026576 | Potato | nucleus | 31.03 | 25.23 |
| PGSC0003DMT400000028 | Potato | nucleus | 32.18 | 25.0 |
| KRH65189 | Soybean | nucleus | 32.18 | 23.63 |
| Zm00001d047356_P002 | Maize | nucleus | 7.47 | 10.92 |
| KRH48299 | Soybean | nucleus | 6.9 | 8.76 |
Protein Annotations
| EntrezGene:103649797 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6MLR7 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | ProteinID:ONM30154.1 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004DE98A3 | EnsemblPlantsGene:Zm00001d039913 | EnsemblPlants:Zm00001d039913_P002 | EnsemblPlants:Zm00001d039913_T002 | SEG:seg | : |
Description
MADS-transcription factor 54MADS-box transcription factor 56
Coordinates
chr3:+:19194748..19210804
Molecular Weight (calculated)
19568.9 Da
IEP (calculated)
9.720
GRAVY (calculated)
-0.847
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARIGADGK AMARRGRVEL RRIEDRVSRQ VRFSKRRSGL FKKAFELSLL CDAEVALIVF SPAGKLYEYA STSIEDTYNR YQQFSGEGRN INDDRNRNDN
101: KDEASSDLQL MLSKIATWSP QSNADESDVD ELEKLENLLR NALKDTRSRK IQMLAKQNSG ASTSGQKSPE QGTA
101: KDEASSDLQL MLSKIATWSP QSNADESDVD ELEKLENLLR NALKDTRSRK IQMLAKQNSG ASTSGQKSPE QGTA
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.