Factsheet for Zm00001d029856_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94525	Sorghum	mitochondrion	92.0	92.74
Zm00001d047119_P001	Maize	mitochondrion	79.2	90.0
Os10t0551600-01	Rice	mitochondrion	88.8	88.8
VIT_02s0154g00330.t01	Wine grape	cytosol	59.2	79.57
Bra024933.1-P	Field mustard	mitochondrion	72.0	72.0
KRH57381	Soybean	mitochondrion	72.0	72.0
CDY17725	Canola	mitochondrion	72.0	72.0
CDY41058	Canola	mitochondrion	72.0	72.0
Solyc08g078860.2.1	Tomato	plastid	71.2	71.2
GSMUA_Achr5P13340_001	Banana	mitochondrion	71.2	71.2
CDY40556	Canola	mitochondrion	71.2	71.2
CDY28920	Canola	mitochondrion	71.2	71.2
CDX77778	Canola	mitochondrion	71.2	71.2
KRH04108	Soybean	mitochondrion	70.4	70.4
Bra022143.1-P	Field mustard	mitochondrion	52.0	69.89
AT5G47570.1	Thale cress	mitochondrion	69.6	69.6
PGSC0003DMT400012096	Potato	mitochondrion	60.8	61.79
Bra017476.1-P	Field mustard	mitochondrion	60.8	56.72
PGSC0003DMT400012230	Potato	mitochondrion	62.4	51.32
GSMUA_Achr1P01460_001	Banana	mitochondrion, plastid	37.6	40.52

Protein Annotations

EMBL:EU952269	EMBL:EU958415	EMBL:EU972799	EMBL:EU975055	EnsemblPlants:Zm00001d029856_P001	EnsemblPlants:Zm00001d029856_T001
EnsemblPlantsGene:Zm00001d029856	EntrezGene:100274725	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Put_Complex_I_su8
PANTHER:PTHR36401	ProteinID:ONL99733.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000182B281	UniProt:B6SHQ4
MapMan:2.4.1.4.2.4	:	:	:	:	:

Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 mitochondrial

Coordinates

chr1:+:90494694..90507232

Molecular Weight (calculated)

13087.9 Da

IEP (calculated)

9.184

GRAVY (calculated)

0.065

Length

125 amino acids

Sequence
(BLAST)

001: MAGRLTAAGF RVLGGGGARA AAAAAALRHR AGMGLPVGRH IVPDKPLPVN DELVWDNGTP FPEPCIDRLA PHIGKYEALA WLCGGLGFFA ALGVAAVVND
101: KASKIPYTPK VYPYDSLRAE LGDRP

Best Arabidopsis Sequence Match ( AT5G47570.1 )
(BLAST)

001: MAGRLSGVAS RIMGGNGVVA RSVGSSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA FPEPCIDRIA DTVGKYEALA WLSGGLGFFV GLGLLAVLND
101: KASKVPFTPR VYPYDNLRVE LGGEP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.