CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024933.1-P	Field mustard	mitochondrion	99.2	99.2
CDX77778	Canola	mitochondrion	99.2	99.2
CDY41058	Canola	mitochondrion	99.2	99.2
CDY28920	Canola	mitochondrion	95.2	95.2
CDY40556	Canola	mitochondrion	95.2	95.2
AT5G47570.1	Thale cress	mitochondrion	94.4	94.4
VIT_02s0154g00330.t01	Wine grape	cytosol	65.6	88.17
Solyc08g078860.2.1	Tomato	plastid	86.4	86.4
KRH57381	Soybean	mitochondrion	84.8	84.8
KRH04108	Soybean	mitochondrion	84.0	84.0
GSMUA_Achr5P13340_001	Banana	mitochondrion	81.6	81.6
EER94525	Sorghum	mitochondrion	74.4	75.0
PGSC0003DMT400012096	Potato	mitochondrion	72.8	73.98
TraesCS1A01G209600.1	Wheat	mitochondrion	73.6	73.6
TraesCS1B01G223600.1	Wheat	mitochondrion	73.6	73.6
TraesCS1D01G213000.1	Wheat	mitochondrion	73.6	73.6
Os10t0551600-01	Rice	mitochondrion	72.8	72.8
Zm00001d047119_P001	Maize	mitochondrion	64.0	72.73
Zm00001d029856_P001	Maize	mitochondrion	72.0	72.0
PGSC0003DMT400012230	Potato	mitochondrion	74.4	61.18
HORVU1Hr1G053600.6	Barley	mitochondrion	65.6	58.99
GSMUA_Achr1P01460_001	Banana	mitochondrion, plastid	44.0	47.41
OQU77683	Sorghum	mitochondrion	44.8	35.67

Protein Annotations

EnsemblPlants:CDY17725	EnsemblPlantsGene:GSBRNA2T00001950001	GO:A0A078FT69	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Put_Complex_I_su8	PANTHER:PTHR36401	ProteinID:CDY17725	ProteinID:CDY17725.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0003E5E35A	UniProt:A0A078FT69	MapMan:2.4.1.4.2.4	:	:	:

Description

BnaA06g35440DBnaA06g35440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT69]

Coordinates

chrLK032076:+:729994..731234

Molecular Weight (calculated)

13245.0 Da

IEP (calculated)

8.211

GRAVY (calculated)

0.007

Length

125 amino acids

Sequence
(BLAST)

001: MAGRLSGVAS RIMGGNGVVA RSNASSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA FPEPCIDRIA DTVGKYEALG WLCGGLGFFA TLGLLAVVND
101: KASKVPFTPR VYPYDNLRVE LGGEP

Best Arabidopsis Sequence Match ( AT5G47570.1 )
(BLAST)

001: MAGRLSGVAS RIMGGNGVVA RSVGSSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA FPEPCIDRIA DTVGKYEALA WLSGGLGFFV GLGLLAVLND
101: KASKVPFTPR VYPYDNLRVE LGGEP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.