Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 2
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57381 | Soybean | mitochondrion | 90.32 | 67.2 |
| Solyc08g078860.2.1 | Tomato | plastid | 89.25 | 66.4 |
| KRH04108 | Soybean | mitochondrion | 88.17 | 65.6 |
| Bra024933.1-P | Field mustard | mitochondrion | 88.17 | 65.6 |
| CDY17725 | Canola | mitochondrion | 88.17 | 65.6 |
| CDY28920 | Canola | mitochondrion | 88.17 | 65.6 |
| CDY41058 | Canola | mitochondrion | 88.17 | 65.6 |
| AT5G47570.1 | Thale cress | mitochondrion | 87.1 | 64.8 |
| CDY40556 | Canola | mitochondrion | 87.1 | 64.8 |
| CDX77778 | Canola | mitochondrion | 87.1 | 64.8 |
| GSMUA_Achr5P13340_001 | Banana | mitochondrion | 86.02 | 64.0 |
| Bra022143.1-P | Field mustard | mitochondrion | 60.22 | 60.22 |
| Zm00001d029856_P001 | Maize | mitochondrion | 79.57 | 59.2 |
| EER94525 | Sorghum | mitochondrion | 78.49 | 58.87 |
| Os10t0551600-01 | Rice | mitochondrion | 78.49 | 58.4 |
| TraesCS1A01G209600.1 | Wheat | mitochondrion | 77.42 | 57.6 |
| TraesCS1B01G223600.1 | Wheat | mitochondrion | 77.42 | 57.6 |
| TraesCS1D01G213000.1 | Wheat | mitochondrion | 77.42 | 57.6 |
| Zm00001d047119_P001 | Maize | mitochondrion | 64.52 | 54.55 |
| PGSC0003DMT400012096 | Potato | mitochondrion | 70.97 | 53.66 |
| Bra017476.1-P | Field mustard | mitochondrion | 68.82 | 47.76 |
| PGSC0003DMT400012230 | Potato | mitochondrion | 73.12 | 44.74 |
| HORVU1Hr1G053600.6 | Barley | mitochondrion | 66.67 | 44.6 |
| OQU77683 | Sorghum | mitochondrion | 52.69 | 31.21 |
| GSMUA_Achr1P01460_001 | Banana | mitochondrion, plastid | 33.33 | 26.72 |
Protein Annotations
| ArrayExpress:VIT_02s0154g00330 | EMBL:FN596001 | EnsemblPlants:VIT_02s0154g00330.t01 | EnsemblPlantsGene:VIT_02s0154g00330 | EntrezGene:100245490 | EntrezGene:LOC100245490 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Put_Complex_I_su8 | PANTHER:PTHR36401 | ProteinID:CCB56511 |
| ProteinID:CCB56511.1 | RefSeq:XP_002271288 | RefSeq:XP_002271288.1 | SEG:seg | TIGR:TC62676 | TMHMM:TMhelix |
| UniParc:UPI0002108556 | UniProt:F6HPA5 | wikigene:100245490 | wikigene:LOC100245490 | MapMan:2.4.1.4.2.4 | : |
Description
No Description!
Coordinates
chr2:-:5148071..5157542
Molecular Weight (calculated)
10255.4 Da
IEP (calculated)
4.686
GRAVY (calculated)
-0.041
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MGLPVGKHIV PNKPLPVNDE LIWDNGTPFP EPCIDRIAET VGKYEALAWM CGGLSFFASL GLLAVWNDKA SKIPFTPRVY PYDNLRVELG GEP
001: MAGRLSGVAS RIMGGNGVVA RSVGSSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA FPEPCIDRIA DTVGKYEALA WLSGGLGFFV GLGLLAVLND
101: KASKVPFTPR VYPYDNLRVE LGGEP
101: KASKVPFTPR VYPYDNLRVE LGGEP
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.