Factsheet for Solyc08g078860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022143.1-P	Field mustard	mitochondrion	66.4	89.25
VIT_02s0154g00330.t01	Wine grape	cytosol	66.4	89.25
AT5G47570.1	Thale cress	mitochondrion	87.2	87.2
CDY17725	Canola	mitochondrion	86.4	86.4
CDY28920	Canola	mitochondrion	86.4	86.4
CDY41058	Canola	mitochondrion	86.4	86.4
PGSC0003DMT400012096	Potato	mitochondrion	84.8	86.18
Bra024933.1-P	Field mustard	mitochondrion	85.6	85.6
CDX77778	Canola	mitochondrion	85.6	85.6
CDY40556	Canola	mitochondrion	85.6	85.6
KRH57381	Soybean	mitochondrion	84.8	84.8
KRH04108	Soybean	mitochondrion	83.2	83.2
GSMUA_Achr5P13340_001	Banana	mitochondrion	82.4	82.4
EER94525	Sorghum	mitochondrion	72.8	73.39
TraesCS1A01G209600.1	Wheat	mitochondrion	72.8	72.8
TraesCS1B01G223600.1	Wheat	mitochondrion	72.8	72.8
TraesCS1D01G213000.1	Wheat	mitochondrion	72.8	72.8
PGSC0003DMT400012230	Potato	mitochondrion	87.2	71.71
Zm00001d029856_P001	Maize	mitochondrion	71.2	71.2
Os10t0551600-01	Rice	mitochondrion	71.2	71.2
Zm00001d047119_P001	Maize	mitochondrion	61.6	70.0
Bra017476.1-P	Field mustard	mitochondrion	72.0	67.16
HORVU1Hr1G053600.6	Barley	mitochondrion	64.8	58.27
GSMUA_Achr1P01460_001	Banana	mitochondrion, plastid	43.2	46.55
OQU77683	Sorghum	mitochondrion	43.2	34.39

Protein Annotations

EnsemblPlants:Solyc08g078860.2.1	EnsemblPlantsGene:Solyc08g078860.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	GO:GO:0016021	InterPro:Put_Complex_I_su8	PANTHER:PTHR36401
TMHMM:TMhelix	UniParc:UPI000276AEFD	UniProt:K4CNP5	MapMan:2.4.1.4.2.4	:	:

Description

No Description!

Coordinates

chr8:+:62552819..62558122

Molecular Weight (calculated)

13391.3 Da

IEP (calculated)

8.057

GRAVY (calculated)

0.002

Length

125 amino acids

Sequence
(BLAST)

001: MAGRLSNVAT RIMGGNGVVA RSLASSLRTR AGMGLPVGKH IVPDKPLHVN DELTWDNGTP FPEPCIDRIA DTVGKYEALA WLCGGLSCFV GIGLLAVWND
101: KASKIPFTPK VYPYDNLRVE LGGEP

Best Arabidopsis Sequence Match ( AT5G47570.1 )
(BLAST)

001: MAGRLSGVAS RIMGGNGVVA RSVGSSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA FPEPCIDRIA DTVGKYEALA WLSGGLGFFV GLGLLAVLND
101: KASKVPFTPR VYPYDNLRVE LGGEP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.