Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60686 | Canola | cytosol, nucleus, plastid | 18.05 | 74.63 |
| EES07448 | Sorghum | nucleus | 67.87 | 73.73 |
| Os02t0682200-01 | Rice | nucleus | 61.73 | 68.4 |
| Zm00001d051465_P002 | Maize | nucleus | 68.95 | 65.19 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 62.82 | 65.17 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 62.82 | 64.93 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 50.9 | 60.0 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 51.99 | 59.5 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 55.23 | 59.07 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 51.62 | 58.61 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 50.18 | 57.44 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 56.32 | 57.35 |
| Solyc01g093960.2.1 | Tomato | nucleus | 50.9 | 55.95 |
| PGSC0003DMT400000383 | Potato | nucleus | 51.26 | 55.69 |
| KRH65193 | Soybean | nucleus | 48.74 | 55.1 |
| KRH48304 | Soybean | nucleus | 48.38 | 54.69 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 56.68 | 54.14 |
| AT2G45650.1 | Thale cress | nucleus | 45.85 | 50.4 |
| Zm00001d003409_P001 | Maize | nucleus | 15.52 | 49.43 |
| CDY18911 | Canola | nucleus | 41.88 | 48.95 |
| CDY18912 | Canola | nucleus | 42.24 | 48.55 |
| Bra004927.1-P | Field mustard | nucleus | 41.88 | 47.93 |
| CDX74754 | Canola | nucleus | 44.04 | 47.66 |
| CDY53885 | Canola | nucleus | 41.88 | 45.14 |
| Bra000392.1-P | Field mustard | nucleus | 41.88 | 45.14 |
| Zm00001d006094_P001 | Maize | nucleus | 38.99 | 43.03 |
| Zm00001d021057_P001 | Maize | nucleus | 37.55 | 42.11 |
| Zm00001d031620_P001 | Maize | nucleus | 38.27 | 41.57 |
| Zm00001d034047_P007 | Maize | nucleus | 35.38 | 40.83 |
| Zm00001d045227_P001 | Maize | nucleus | 19.86 | 40.74 |
| Zm00001d045231_P002 | Maize | nucleus | 32.85 | 40.44 |
| Bra014454.1-P | Field mustard | nucleus | 32.49 | 39.13 |
| AT3G61120.1 | Thale cress | nucleus | 33.94 | 38.52 |
| Zm00001d028217_P001 | Maize | nucleus | 35.74 | 38.37 |
| Zm00001d048082_P001 | Maize | nucleus | 34.66 | 38.1 |
| CDX89097 | Canola | nucleus | 32.85 | 36.99 |
| Zm00001d022088_P004 | Maize | nucleus | 32.49 | 34.88 |
| Zm00001d039434_P001 | Maize | nucleus | 31.41 | 33.21 |
| Zm00001d018667_P003 | Maize | nucleus | 32.13 | 32.84 |
| Zm00001d023955_P003 | Maize | nucleus | 29.24 | 30.57 |
| Zm00001d013259_P002 | Maize | nucleus | 30.69 | 30.47 |
| Zm00001d042591_P002 | Maize | nucleus | 29.24 | 30.22 |
| Zm00001d034045_P003 | Maize | nucleus | 30.32 | 28.87 |
| Zm00001d041781_P001 | Maize | nucleus | 29.6 | 28.57 |
| Zm00001d007949_P001 | Maize | nucleus | 31.41 | 28.52 |
| Zm00001d017932_P002 | Maize | nucleus | 23.1 | 27.12 |
| Zm00001d023736_P001 | Maize | nucleus | 24.55 | 26.46 |
| Zm00001d037737_P001 | Maize | nucleus | 28.88 | 26.14 |
| Zm00001d016957_P003 | Maize | nucleus | 22.38 | 25.83 |
| CDY42485 | Canola | nucleus | 32.85 | 24.07 |
| Zm00001d008882_P001 | Maize | nucleus | 28.16 | 23.71 |
| Zm00001d050897_P002 | Maize | nucleus | 23.47 | 20.57 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:542256 | UniProt:A0A1D6HG08 | ProteinID:AQK73562.1 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000842F1A2 | EnsemblPlantsGene:Zm00001d017614 | EnsemblPlants:Zm00001d017614_P003 | EnsemblPlants:Zm00001d017614_T003 | : |
Description
bearded-ear1Agamous-like MADS-box protein AGL6
Coordinates
chr5:+:201741323..201748614
Molecular Weight (calculated)
31069.0 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.538
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA GITKTLERYQ HCCYNAQDSN GALSETQSWY QEMSKLRAKF
101: EALQRTQRLA LAWGGTWPTE CEGVAAARET ARMCFVTGKT EKDTTYDGAS GRAPQKAVLV HRTLMSKIFA TFSWTAQERH LGEMNRQLKH KLEAEGCSNY
201: RTLQHAAWPA PGSTMVEHDG ATYHVHPTTA QSVAMDCEPT LQIGYPPHHQ FLPSEAANNI PRSPPGGENN FMLGWVL
101: EALQRTQRLA LAWGGTWPTE CEGVAAARET ARMCFVTGKT EKDTTYDGAS GRAPQKAVLV HRTLMSKIFA TFSWTAQERH LGEMNRQLKH KLEAEGCSNY
201: RTLQHAAWPA PGSTMVEHDG ATYHVHPTTA QSVAMDCEPT LQIGYPPHHQ FLPSEAANNI PRSPPGGENN FMLGWVL
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.