Factsheet for Solyc01g093960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106170.2.1
Solyc02g071730.2.1
Solyc02g091550.1.1
Solyc03g114830.2.1
Solyc04g076280.2.1
Solyc05g051830.2.1
Solyc05g056620.1.1
Solyc06g069430.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45650.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT2G45650.1	Solyc05g051830.2.1	AT1G77980.1	15805477
AT2G45650.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT2G45650.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT2G45650.1	Solyc02g071730.2.1	AT4G18960.1	9418042
AT2G45650.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT2G45650.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT2G45650.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT2G45650.1	Solyc06g069430.2.1	AT5G60910.1	15805477
AT3G61120.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT3G61120.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT3G61120.1	Solyc02g091550.1.1	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000383	Potato	nucleus	98.41	97.25
VIT_15s0048g01270.t01	Wine grape	nucleus	75.0	77.46
CDY60686	Canola	cytosol, nucleus, plastid	20.24	76.12
KRH48304	Soybean	nucleus	67.86	69.8
KRH65193	Soybean	nucleus	67.46	69.39
Os02t0682200-01	Rice	nucleus	67.86	68.4
EES07448	Sorghum	nucleus	68.65	67.84
GSMUA_Achr4P30120_001	Banana	nucleus	62.7	67.23
GSMUA_Achr1P00750_001	Banana	nucleus	64.29	66.94
GSMUA_Achr2P10250_001	Banana	nucleus	63.49	66.12
HORVU0Hr1G032300.1	Barley	nucleus	69.44	65.54
HORVU6Hr1G066140.9	Barley	nucleus	69.44	65.3
KXG26975	Sorghum	nucleus	59.13	63.4
TraesCS6B01G286400.1	Wheat	nucleus	64.68	62.93
AT2G45650.1	Thale cress	nucleus	62.7	62.7
TraesCS6D01G240200.3	Wheat	nucleus	65.87	61.03
CDY18911	Canola	nucleus	57.14	60.76
Os04t0580700-01	Rice	nucleus	61.11	60.63
CDY18912	Canola	nucleus	56.75	59.34
Bra004927.1-P	Field mustard	nucleus	56.35	58.68
CDX74754	Canola	nucleus	58.73	57.81
Zm00001d051465_P002	Maize	nucleus	66.67	57.34
TraesCS6A01G259000.2	Wheat	nucleus	65.87	57.24
CDY53885	Canola	nucleus	57.54	56.42
Bra000392.1-P	Field mustard	nucleus	57.54	56.42
Solyc05g015750.2.1	Tomato	nucleus	49.6	51.87
Zm00001d017614_P003	Maize	nucleus	55.95	50.9
AT3G61120.1	Thale cress	nucleus	49.21	50.82
Solyc04g005320.2.1	Tomato	nucleus	46.03	48.74
CDX89097	Canola	nucleus	47.22	48.37
Solyc05g012020.2.1	Tomato	nucleus	46.43	48.35
Solyc12g038510.1.1	Tomato	nucleus	47.62	48.0
Solyc03g114840.2.1	Tomato	nucleus	46.83	47.97
Bra014454.1-P	Field mustard	nucleus	43.65	47.83
Solyc02g089200.2.1	Tomato	nucleus	46.03	47.15
Solyc06g069430.2.1	Tomato	nucleus	42.46	43.67
Solyc03g114830.2.1	Tomato	nucleus	42.46	43.32
Solyc03g019710.2.1	Tomato	nucleus	28.57	40.68
Solyc11g028020.1.1	Tomato	nucleus	35.71	40.36
Solyc02g089210.2.1	Tomato	nucleus	39.29	39.6
Solyc05g056620.1.1	Tomato	nucleus	37.3	38.52
Solyc02g065730.1.1	Tomato	nucleus	35.71	38.46
Solyc02g091550.1.1	Tomato	nucleus	34.52	37.02
Solyc02g071730.2.1	Tomato	nucleus	35.32	35.89
Solyc07g055920.2.1	Tomato	nucleus	34.52	32.58
CDY42485	Canola	nucleus	48.81	32.54
Solyc01g106170.2.1	Tomato	mitochondrion	18.25	31.08
Solyc04g076700.2.1	Tomato	nucleus	14.68	28.03
Solyc06g064840.2.1	Tomato	nucleus	21.03	26.37
Solyc12g088090.1.1	Tomato	nucleus	19.84	22.52

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4AZD7	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g093960.2	EnsemblPlants:Solyc01g093960.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00027685C0	:	:	:	:

Description

No Description!

Coordinates

chr1:-:85535132..85540286

Molecular Weight (calculated)

28610.2 Da

IEP (calculated)

8.372

GRAVY (calculated)

-0.630

Length

252 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCE AEVALIIFSS RGKLYEFGSA GITKTLERYQ RCCLNPQDNC GERETQSWYQ EVSKLKAKFE
101: ALQRTQRHLL GEDLGALSVK ELQNLEKQLE GALAQARQRK TQIMMEQMEE LRRKERHLGD VNKQLKIKVS LELSSFEGEG QGVPFPWSNC NASLDEAGSS
201: TFHVHHSQSN HMDCDLPDPV LQIGYHQYMA ADGASGSRNM AVESNIIHGW GL

Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL

Arabidopsis Description

AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.