Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 9.25 | 46.15 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 15.42 | 38.96 |
| Bra015645.1-P | Field mustard | nucleus | 19.02 | 35.41 |
| AT1G77950.4 | Thale cress | nucleus | 22.62 | 34.92 |
| CDX87492 | Canola | nucleus | 19.79 | 33.62 |
| CDX88401 | Canola | nucleus | 20.82 | 33.2 |
| Solyc06g033830.1.1 | Tomato | nucleus | 9.51 | 32.74 |
| VIT_07s0031g01140.t01 | Wine grape | nucleus | 27.76 | 31.95 |
| Zm00001d044850_P001 | Maize | nucleus | 21.34 | 29.86 |
| KRH18859 | Soybean | nucleus | 25.19 | 29.34 |
| CDY01295 | Canola | nucleus | 23.14 | 28.94 |
| KRH16660 | Soybean | nucleus | 25.71 | 28.82 |
| Solyc07g052700.2.1 | Tomato | nucleus | 13.88 | 28.42 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 25.19 | 28.41 |
| CDY00423 | Canola | nucleus | 23.65 | 27.46 |
| AT1G22130.1 | Thale cress | nucleus | 23.39 | 27.16 |
| Bra012308.1-P | Field mustard | nucleus | 23.39 | 27.16 |
| CDX91664 | Canola | nucleus | 23.14 | 26.63 |
| CDY41491 | Canola | nucleus | 22.88 | 26.33 |
| AT1G77980.1 | Thale cress | nucleus | 22.36 | 26.2 |
| CDX88402 | Canola | nucleus | 22.11 | 26.14 |
| Os08t0494100-02 | Rice | nucleus | 22.62 | 26.11 |
| Bra015643.1-P | Field mustard | nucleus | 21.85 | 25.84 |
| CDX87489 | Canola | nucleus | 21.85 | 25.84 |
| Bra016386.1-P | Field mustard | nucleus | 20.57 | 25.72 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 20.31 | 25.65 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 20.05 | 25.57 |
| Solyc04g078300.2.1 | Tomato | nucleus | 21.59 | 25.15 |
| Os06t0223300-01 | Rice | nucleus | 23.14 | 25.0 |
| Solyc07g052720.2.1 | Tomato | cytosol, nucleus, plastid | 10.03 | 25.0 |
| KXG19627 | Sorghum | nucleus | 23.39 | 24.4 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 21.85 | 24.08 |
| Zm00001d037212_P001 | Maize | nucleus | 22.36 | 23.64 |
| Solyc06g048380.1.1 | Tomato | cytosol | 10.03 | 22.16 |
| Solyc06g033820.1.1 | Tomato | cytosol, nucleus, plasma membrane | 10.8 | 21.43 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 24.94 | 15.25 |
| Solyc03g115910.1.1 | Tomato | plastid | 15.68 | 14.63 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4C1L4 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc05g051830.2 | EnsemblPlants:Solyc05g051830.2.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000276590F | SEG:seg |
Description
No Description!
Coordinates
chr5:+:62231885..62237754
Molecular Weight (calculated)
44562.4 Da
IEP (calculated)
5.912
GRAVY (calculated)
-0.682
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSKLPLLK IESLTNRQVT FSKRRNGILK KVYELSVLCD VDVGIIMFSP SGRLTHYSRK RRIEDILSEL ISLPDSERGF YINNKESVLW NLRKIEIEDK
101: FCDIERINPA YVNANDTTKK IQDEINGLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR QRMEQLSSNN TPSYEDNMAQ INELLQHIDN
201: TQVHEKPPYD LWLELEDYNH ENNNINSPLY TASETSSISQ SSMNLPSSTT YDTMSQTSLS GETYQNNNNF KQSQHSTRTL PNLTLQTSFK FAKPEMSQTS
301: IEGSFSCLTD ENLKKSICSN RVFPAITPLQ TSFSFAKAEM ETPTSALRPL APYLQAEATT SSCTNQEGNN EMSWFQPKVK KSKQYHSID
101: FCDIERINPA YVNANDTTKK IQDEINGLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR QRMEQLSSNN TPSYEDNMAQ INELLQHIDN
201: TQVHEKPPYD LWLELEDYNH ENNNINSPLY TASETSSISQ SSMNLPSSTT YDTMSQTSLS GETYQNNNNF KQSQHSTRTL PNLTLQTSFK FAKPEMSQTS
301: IEGSFSCLTD ENLKKSICSN RVFPAITPLQ TSFSFAKAEM ETPTSALRPL APYLQAEATT SSCTNQEGNN EMSWFQPKVK KSKQYHSID
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
Arabidopsis Description
AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.