Factsheet for Bra016386.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41491	Canola	nucleus	98.71	90.83
CDX91664	Canola	nucleus	97.11	89.35
Bra012308.1-P	Field mustard	nucleus	86.5	80.3
AT1G22130.1	Thale cress	nucleus	83.92	77.91
Bra015643.1-P	Field mustard	nucleus	71.38	67.48
VIT_19s0014g00310.t01	Wine grape	nucleus	14.47	57.69
Bra015645.1-P	Field mustard	nucleus	36.01	53.59
TraesCS4A01G290700.1	Wheat	nucleus	25.4	51.3
KRH18859	Soybean	nucleus	52.73	49.1
KRH16660	Soybean	nucleus	53.05	47.55
Zm00001d044850_P001	Maize	nucleus	35.37	39.57
GSMUA_Achr3P04450_001	Banana	nucleus	43.09	38.84
HORVU4Hr1G003610.5	Barley	nucleus	37.3	38.03
TraesCS4B01G023300.1	Wheat	nucleus	37.3	37.66
Os08t0494100-02	Rice	nucleus	38.26	35.31
Os06t0223300-01	Rice	nucleus	39.87	34.44
TraesCS4D01G021100.1	Wheat	nucleus	38.59	33.99
KXG19627	Sorghum	nucleus	40.19	33.51
Zm00001d037212_P001	Maize	nucleus	38.91	32.88
Bra011763.1-P	Field mustard	mitochondrion	16.72	29.71
Bra016544.1-P	Field mustard	nucleus	22.19	22.55
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	43.41	21.23
Bra031049.1-P	Field mustard	nucleus	25.4	20.68
Solyc05g051830.2.1	Tomato	nucleus	25.72	20.57
Bra025685.1-P	Field mustard	nucleus	24.12	19.79
Bra024792.1-P	Field mustard	nucleus	23.79	19.63
Bra004393.1-P	Field mustard	nucleus	20.9	18.62
Bra017404.1-P	Field mustard	nucleus	21.54	17.68

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra016386	EnsemblPlants:Bra016386.1	EnsemblPlants:Bra016386.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DIQ9	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025465D2	SEG:seg	:

Description

AT1G22130 (E=2e-079) AGL104 | AGL104 (AGAMOUS-LIKE 104); DNA binding / transcription factor

Coordinates

chrA08:+:18183881..18186324

Molecular Weight (calculated)

35233.3 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.585

Length

311 amino acids

Sequence
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFTRF INLSNQEREN ALVFPDQDRR PPAAIKSDVE
101: ELEQEVCRLQ QQLQMAEEEL RRYEPDPVGF TSMEDYEVCE RQLLDTLTHV VQRREHLVNS HLSSYEASTM QQGIAGPFAN GVLEGWLPEN GHNQVNLFDA
201: SAHSNQLREL SSAMYEPLLQ GSSSSSNQNN MSECHVTNHN GDMFSEWAQA YSSSALFPSM NQHGSVGPSI EEMIPGQQSE IPAVTTMEAP QQAKLEMVDD
301: YETRVPQLSS Q

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.