Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 26.62 | 52.56 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 91.56 | 39.94 |
| Bra015645.1-P | Field mustard | nucleus | 53.25 | 39.23 |
| Os08t0494100-02 | Rice | nucleus | 80.52 | 36.8 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 73.38 | 36.69 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 71.43 | 36.07 |
| CDX87492 | Canola | nucleus | 53.25 | 35.81 |
| AT1G77950.4 | Thale cress | nucleus | 58.44 | 35.71 |
| CDX88401 | Canola | nucleus | 54.55 | 34.43 |
| VIT_07s0031g01140.t01 | Wine grape | nucleus | 64.94 | 29.59 |
| CDY01295 | Canola | nucleus | 59.74 | 29.58 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 66.23 | 29.57 |
| AT1G77980.1 | Thale cress | nucleus | 63.64 | 29.52 |
| CDX88402 | Canola | nucleus | 62.99 | 29.48 |
| CDX87489 | Canola | nucleus | 62.99 | 29.48 |
| Bra015643.1-P | Field mustard | nucleus | 62.99 | 29.48 |
| KRH18859 | Soybean | nucleus | 63.64 | 29.34 |
| KRH16660 | Soybean | nucleus | 63.64 | 28.24 |
| AT1G22130.1 | Thale cress | nucleus | 61.04 | 28.06 |
| CDY41491 | Canola | nucleus | 61.04 | 27.81 |
| Bra012308.1-P | Field mustard | nucleus | 59.74 | 27.46 |
| CDX91664 | Canola | nucleus | 59.74 | 27.22 |
| CDY00423 | Canola | nucleus | 58.44 | 26.87 |
| Bra016386.1-P | Field mustard | nucleus | 51.3 | 25.4 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 66.23 | 16.04 |
| Solyc05g051830.2.1 | Tomato | nucleus | 38.96 | 15.42 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 36.36 | 14.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF154 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS4A01G290700 |
| EnsemblPlants:TraesCS4A01G290700.1 | TIGR:cd00265 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:594350894..594351879
Molecular Weight (calculated)
17993.9 Da
IEP (calculated)
10.260
GRAVY (calculated)
-0.583
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLAIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SRRLCPFSGR HGVEDVLLRY LNMSDNDRGE PIQNREYLIS MLQRLKRESD
101: MATQLANPGA LNEKIEEIQK EIYACQQQLQ ISEERLRYKP RPAPFSTLFV RSRP
101: MATQLANPGA LNEKIEEIQK EIYACQQQLQ ISEERLRYKP RPAPFSTLFV RSRP
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
Arabidopsis Description
AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.