Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G484500.1 | Wheat | nucleus | 93.36 | 93.36 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 89.21 | 89.21 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 85.06 | 86.86 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 57.68 | 75.14 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 50.62 | 74.39 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 59.75 | 58.78 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 59.75 | 58.78 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 58.92 | 54.41 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 9.13 | 53.66 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 44.81 | 51.18 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 52.28 | 50.2 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 38.59 | 49.47 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 42.32 | 44.93 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 33.61 | 42.41 |
| EES06917 | Sorghum | mitochondrion, nucleus | 37.76 | 35.14 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 39.42 | 34.17 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 45.23 | 33.75 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 22.41 | 33.13 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 25.73 | 31.79 |
| Zm00001d016791_P001 | Maize | mitochondrion | 37.34 | 31.36 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 29.46 | 30.87 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 29.46 | 30.6 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 29.46 | 30.6 |
| Bra012335.1-P | Field mustard | mitochondrion | 20.33 | 30.25 |
| CDY25744 | Canola | mitochondrion | 20.33 | 30.25 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 29.46 | 30.08 |
| KXG38099 | Sorghum | plastid | 39.0 | 29.84 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 38.17 | 29.68 |
| KRG88863 | Soybean | mitochondrion, nucleus | 17.01 | 29.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.22 | 29.18 |
| Bra024521.1-P | Field mustard | mitochondrion | 19.5 | 29.01 |
| CDY04801 | Canola | mitochondrion, nucleus | 19.5 | 29.01 |
| CDY21372 | Canola | mitochondrion | 19.5 | 29.01 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 41.49 | 27.55 |
| EER91288 | Sorghum | mitochondrion, nucleus | 35.68 | 27.39 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 14.11 | 27.2 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 26.14 | 26.92 |
| CDY64992 | Canola | mitochondrion, nucleus | 17.01 | 26.62 |
| KRH33740 | Soybean | nucleus | 17.43 | 26.42 |
| CDX80580 | Canola | nucleus | 21.99 | 26.24 |
| Solyc01g102260.2.1 | Tomato | nucleus | 26.97 | 26.1 |
| KRG98143 | Soybean | nucleus | 22.82 | 26.07 |
| PGSC0003DMT400086956 | Potato | nucleus | 15.77 | 25.85 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 26.14 | 25.71 |
| CDY33537 | Canola | nucleus | 20.75 | 25.51 |
| KRG89836 | Soybean | nucleus | 15.77 | 25.5 |
| KRH30476 | Soybean | nucleus | 15.77 | 25.33 |
| PGSC0003DMT400089787 | Potato | cytosol | 18.26 | 25.29 |
| KRH30113 | Soybean | nucleus | 17.84 | 25.15 |
| CDX88234 | Canola | nucleus | 19.09 | 25.14 |
| KRG98148 | Soybean | nucleus | 23.65 | 24.89 |
| Bra009913.1-P | Field mustard | nucleus | 20.75 | 24.63 |
| KRH72060 | Soybean | nucleus | 17.01 | 23.98 |
| KRG97962 | Soybean | nucleus | 23.65 | 23.85 |
| KRG98152 | Soybean | nucleus | 18.67 | 23.68 |
| KRH30919 | Soybean | nucleus | 23.65 | 23.55 |
| KRG98149 | Soybean | nucleus | 20.75 | 23.47 |
| AT5G26630.1 | Thale cress | nucleus | 21.16 | 23.39 |
| KRG98150 | Soybean | mitochondrion, nucleus | 16.18 | 23.35 |
| KRH66052 | Soybean | mitochondrion, nucleus | 21.16 | 22.67 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 10.79 | 21.85 |
| KRH30119 | Soybean | cytosol | 14.52 | 21.74 |
| KRG98142 | Soybean | nucleus | 23.65 | 21.35 |
| AT3G05860.1 | Thale cress | nucleus | 22.82 | 21.15 |
| KRH30473 | Soybean | mitochondrion, nucleus | 19.09 | 20.81 |
| KRG88915 | Soybean | mitochondrion, nucleus | 17.84 | 20.77 |
| KRH30472 | Soybean | nucleus | 18.26 | 20.75 |
| PGSC0003DMT400073719 | Potato | nucleus | 22.41 | 20.69 |
| CDY27735 | Canola | nucleus | 22.82 | 20.6 |
| PGSC0003DMT400095062 | Potato | nucleus | 23.65 | 20.21 |
| KRH66114 | Soybean | nucleus | 16.6 | 20.2 |
| Bra020555.1-P | Field mustard | nucleus | 17.84 | 19.91 |
| CDY05540 | Canola | nucleus | 17.84 | 19.91 |
| CDY25000 | Canola | nucleus | 17.84 | 19.91 |
| KRG98147 | Soybean | mitochondrion, nucleus | 20.75 | 19.46 |
| PGSC0003DMT400003073 | Potato | cytosol | 8.71 | 19.44 |
| Bra029469.1-P | Field mustard | nucleus | 24.48 | 19.41 |
| CDY60402 | Canola | nucleus | 24.48 | 19.41 |
| KRH72066 | Soybean | mitochondrion, nucleus | 16.18 | 18.93 |
| PGSC0003DMT400088489 | Potato | nucleus | 16.6 | 18.78 |
| PGSC0003DMT400090586 | Potato | nucleus | 18.26 | 18.72 |
| Bra018490.1-P | Field mustard | nucleus | 22.41 | 18.62 |
| CDX97329 | Canola | nucleus | 22.41 | 18.62 |
| CDY71896 | Canola | nucleus | 13.28 | 18.6 |
| Bra039404.1-P | Field mustard | nucleus | 23.24 | 18.54 |
| PGSC0003DMT400089454 | Potato | nucleus | 18.67 | 18.37 |
| AT1G65300.1 | Thale cress | nucleus | 20.75 | 17.99 |
| AT5G48670.1 | Thale cress | nucleus | 23.65 | 17.76 |
| CDY38696 | Canola | nucleus | 19.92 | 17.27 |
| PGSC0003DMT400088654 | Potato | nucleus | 23.24 | 17.13 |
| Bra035448.1-P | Field mustard | nucleus | 18.67 | 17.05 |
| KRG88862 | Soybean | nucleus | 21.99 | 16.93 |
| KRH30471 | Soybean | nucleus | 21.16 | 16.83 |
| AT5G35120.1 | Thale cress | cytosol | 7.47 | 16.82 |
| Bra035449.1-P | Field mustard | nucleus | 18.26 | 16.67 |
| PGSC0003DMT400088008 | Potato | nucleus | 13.28 | 16.58 |
| AT1G65330.1 | Thale cress | nucleus | 19.09 | 16.49 |
| PGSC0003DMT400091650 | Potato | nucleus | 17.43 | 16.22 |
| CDY27734 | Canola | nucleus | 22.41 | 16.07 |
| PGSC0003DMT400090953 | Potato | nucleus | 22.41 | 16.07 |
| Bra041022.1-P | Field mustard | nucleus | 21.99 | 15.87 |
| CDY05207 | Canola | nucleus | 21.58 | 15.57 |
| KRG88914 | Soybean | cytosol | 14.11 | 15.53 |
| PGSC0003DMT400095755 | Potato | nucleus | 21.99 | 15.41 |
| CDY18830 | Canola | nucleus | 21.58 | 15.12 |
| PGSC0003DMT400061726 | Potato | nucleus | 20.33 | 14.98 |
| AT2G28700.1 | Thale cress | nucleus | 20.33 | 14.89 |
| AT5G27960.1 | Thale cress | nucleus | 19.5 | 14.69 |
| KRG98146 | Soybean | nucleus | 19.92 | 14.63 |
| PGSC0003DMT400087890 | Potato | cytosol | 6.64 | 14.29 |
| PGSC0003DMT400090516 | Potato | nucleus | 10.37 | 14.12 |
| PGSC0003DMT400077258 | Potato | nucleus | 22.82 | 14.1 |
| AT5G26650.1 | Thale cress | nucleus | 20.75 | 13.66 |
| AT5G26580.1 | Thale cress | nucleus | 19.5 | 13.62 |
| CDX80577 | Canola | mitochondrion, nucleus | 17.01 | 13.62 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 19.5 | 13.47 |
| CDX88231 | Canola | nucleus | 15.35 | 13.41 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 21.16 | 13.32 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.05 | 13.28 |
| AT1G59930.1 | Thale cress | cytosol | 7.05 | 12.88 |
| AT1G31630.1 | Thale cress | mitochondrion | 17.84 | 12.68 |
| Bra040248.1-P | Field mustard | nucleus | 21.58 | 12.59 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 18.67 | 12.36 |
| CDY71564 | Canola | nucleus | 17.01 | 12.09 |
| PGSC0003DMT400085256 | Potato | nucleus | 18.67 | 11.9 |
| Bra020552.1-P | Field mustard | nucleus | 16.6 | 11.73 |
| PGSC0003DMT400085623 | Potato | nucleus | 9.13 | 11.0 |
| PGSC0003DMT400086919 | Potato | nucleus | 11.2 | 10.98 |
| PGSC0003DMT400094378 | Potato | nucleus | 7.05 | 10.9 |
| CDY05333 | Canola | nucleus | 17.01 | 10.88 |
| CDY05515 | Canola | nucleus | 17.01 | 10.88 |
| CDY70782 | Canola | nucleus | 14.11 | 10.53 |
| Bra020525.1-P | Field mustard | nucleus | 17.01 | 10.38 |
| AT1G31640.1 | Thale cress | mitochondrion | 19.92 | 10.34 |
| Bra020550.1-P | Field mustard | nucleus | 15.77 | 10.0 |
| PGSC0003DMT400094113 | Potato | cytosol | 7.05 | 9.83 |
| CDY67043 | Canola | nucleus | 15.77 | 9.72 |
| Bra020524.1-P | Field mustard | nucleus | 14.11 | 9.44 |
| CDY05514 | Canola | nucleus | 14.11 | 9.44 |
| PGSC0003DMT400086447 | Potato | cytosol | 7.47 | 9.38 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 6.22 | 9.2 |
| Solyc07g043080.1.1 | Tomato | cytosol | 4.56 | 8.87 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 9.13 | 7.8 |
| PGSC0003DMT400089615 | Potato | cytosol | 5.81 | 5.88 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 2.49 | 5.13 |
| PGSC0003DMT400061722 | Potato | plastid | 2.07 | 4.81 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 3.32 | 3.98 |
| PGSC0003DMT400091747 | Potato | plastid | 2.49 | 3.95 |
| PGSC0003DMT400065010 | Potato | vacuole | 2.9 | 3.5 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| EnsemblPlantsGene:TraesCS7B01G484100 | EnsemblPlants:TraesCS7B01G484100.1 | TIGR:cd00266 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:741559012..741559737
Molecular Weight (calculated)
26989.0 Da
IEP (calculated)
9.610
GRAVY (calculated)
-0.411
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRKKVARKA TLLYIPHDST RRNRFKKRLK GLMKKADELA VLCDAKTCVL VYEEGKAAPE VFPSQAEAVG IMNRFKSMPE MVQWKEVMNQ KGFISKHIDK
101: LREQVDKTQR EYEDGKIRYL LHKTMHGDLS GLVGLNIEEL TKVGYKVDVL LKSISERMSK IHSRTLPPAP CVATGSIDMG SPALYPAPPQ QENRLDMVSS
201: GGDLDTLVYG GYAGANFSSS DMMMQMQSFD MGFGSSPFPP M
101: LREQVDKTQR EYEDGKIRYL LHKTMHGDLS GLVGLNIEEL TKVGYKVDVL LKSISERMSK IHSRTLPPAP CVATGSIDMG SPALYPAPPQ QENRLDMVSS
201: GGDLDTLVYG GYAGANFSSS DMMMQMQSFD MGFGSSPFPP M
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQVNIFSSNF
201: LSSDADQ
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQVNIFSSNF
201: LSSDADQ
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.