Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G59930.1 | Thale cress | cytosol | 85.98 | 69.7 |
| AT1G65300.1 | Thale cress | nucleus | 50.47 | 19.42 |
| AT1G65330.1 | Thale cress | nucleus | 49.53 | 19.0 |
| PGSC0003DMT400003073 | Potato | cytosol | 16.82 | 16.67 |
| CDY71896 | Canola | nucleus | 25.23 | 15.7 |
| AT5G26630.1 | Thale cress | nucleus | 28.04 | 13.76 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 20.56 | 13.41 |
| AT1G31630.1 | Thale cress | mitochondrion | 42.06 | 13.27 |
| AT5G27960.1 | Thale cress | nucleus | 39.25 | 13.12 |
| AT5G26580.1 | Thale cress | nucleus | 39.25 | 12.17 |
| AT5G26650.1 | Thale cress | nucleus | 41.12 | 12.02 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 13.08 | 11.76 |
| KXG28893 | Sorghum | nucleus | 17.76 | 11.31 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 23.36 | 11.01 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 15.89 | 10.9 |
| CDX88231 | Canola | nucleus | 28.04 | 10.87 |
| CDY70782 | Canola | nucleus | 32.71 | 10.84 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 24.3 | 10.79 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 24.3 | 10.61 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 24.3 | 10.61 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 23.36 | 10.37 |
| CDY71564 | Canola | nucleus | 32.71 | 10.32 |
| CDX80577 | Canola | mitochondrion, nucleus | 28.97 | 10.3 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 17.76 | 10.27 |
| KXG28892 | Sorghum | nucleus | 17.76 | 10.27 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 17.76 | 10.27 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 17.76 | 10.27 |
| Bra020552.1-P | Field mustard | nucleus | 32.71 | 10.26 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 22.43 | 10.17 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 21.5 | 10.13 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 20.56 | 9.95 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 17.76 | 9.95 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 21.5 | 9.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.5 | 9.87 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 16.82 | 9.78 |
| EES10067 | Sorghum | mitochondrion | 18.69 | 9.71 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 22.43 | 9.68 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 20.56 | 9.61 |
| AT1G31640.1 | Thale cress | mitochondrion | 41.12 | 9.48 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 20.56 | 9.48 |
| Zm00001d048894_P001 | Maize | mitochondrion | 21.5 | 9.31 |
| Bra020550.1-P | Field mustard | nucleus | 32.71 | 9.21 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 14.02 | 9.2 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 15.89 | 9.04 |
| AT5G48670.1 | Thale cress | nucleus | 27.1 | 9.03 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 15.89 | 8.9 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 15.89 | 8.72 |
| CDY67043 | Canola | nucleus | 31.78 | 8.7 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 18.69 | 8.7 |
| KXG32310 | Sorghum | nucleus | 19.63 | 8.68 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 22.43 | 8.63 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 19.63 | 8.57 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 16.82 | 8.53 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 16.82 | 8.53 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 18.69 | 8.47 |
| Os03t0582400-01 | Rice | nucleus | 19.63 | 8.43 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 14.95 | 8.42 |
| KXG28889 | Sorghum | nucleus | 19.63 | 8.4 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 17.76 | 8.37 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 19.63 | 8.37 |
| Zm00001d016791_P001 | Maize | mitochondrion | 22.43 | 8.36 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 15.89 | 8.29 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 28.04 | 8.24 |
| KXG28888 | Sorghum | nucleus | 19.63 | 8.24 |
| AT2G28700.1 | Thale cress | nucleus | 25.23 | 8.21 |
| EES06917 | Sorghum | mitochondrion, nucleus | 19.63 | 8.11 |
| OQU83804 | Sorghum | mitochondrion | 17.76 | 8.09 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 19.63 | 8.05 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 19.63 | 8.05 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 19.63 | 8.05 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 14.95 | 8.04 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 15.89 | 8.02 |
| OQU83806 | Sorghum | nucleus | 13.08 | 8.0 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 16.82 | 7.93 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 17.76 | 7.88 |
| KXG28890 | Sorghum | mitochondrion | 18.69 | 7.84 |
| AT3G05860.1 | Thale cress | nucleus | 18.69 | 7.69 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 18.69 | 7.69 |
| TraesCS7D01G548500.1 | Wheat | plastid | 16.82 | 7.66 |
| KXG38099 | Sorghum | plastid | 22.43 | 7.62 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 17.76 | 7.57 |
| Bra020524.1-P | Field mustard | nucleus | 25.23 | 7.5 |
| CDY05514 | Canola | nucleus | 25.23 | 7.5 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 15.89 | 7.49 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 16.82 | 7.47 |
| CDY05333 | Canola | nucleus | 26.17 | 7.43 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 15.89 | 7.26 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 15.89 | 7.26 |
| CDY05515 | Canola | nucleus | 25.23 | 7.16 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 15.89 | 7.05 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 20.56 | 6.63 |
| Bra020525.1-P | Field mustard | nucleus | 24.3 | 6.58 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 18.69 | 6.47 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 18.69 | 6.39 |
| EER91288 | Sorghum | mitochondrion, nucleus | 18.69 | 6.37 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 17.76 | 6.07 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 16.82 | 5.81 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 15.89 | 5.54 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 15.89 | 5.26 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 14.95 | 4.97 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 16.82 | 4.96 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 14.95 | 4.95 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 15.89 | 4.78 |
| PGSC0003DMT400089615 | Potato | cytosol | 3.74 | 1.68 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 0.93 | 1.18 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:AT5G35120 | EnsemblPlants:AT5G35120.1 | EnsemblPlantsGene:AT5G35120 | EntrezGene:833465 | GO:GO:0008150 | ncoils:Coil |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 | ProteinID:AED93933.1 | RefSeq:AT5G35120 | RefSeq:AT5G35120-TAIR-G | RefSeq:NP_198362.1 |
| TAIR:AT5G35120 | TAIR:AT5G35120.1 | Unigene:At.65575 | UniParc:UPI000016270F | UniProt:Q3E8P4 | MapMan:35.1 |
Description
MADS-box family protein [Source:UniProtKB/TrEMBL;Acc:Q3E8P4]
Coordinates
chr5:-:13386852..13387175
Molecular Weight (calculated)
12221.6 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.713
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEAFLREK IEKAQAQLQK LRDENRVMKA RKIMWGCIEG NINVCQLGEK DLKDLSSVID DYLNSLKSRV EYLKKNGESS SSLPPRVVPY LNVEEDADVP
101: SMDGSHH
101: SMDGSHH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.