Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27735 | Canola | nucleus | 62.31 | 60.67 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 9.23 | 58.54 |
| Bra039404.1-P | Field mustard | nucleus | 62.31 | 53.64 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 31.92 | 50.92 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 18.85 | 41.18 |
| AT2G28700.1 | Thale cress | nucleus | 43.46 | 34.35 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 10.77 | 32.94 |
| AT5G26630.1 | Thale cress | nucleus | 25.77 | 30.73 |
| AT1G65300.1 | Thale cress | nucleus | 31.15 | 29.14 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 24.62 | 28.96 |
| AT5G48670.1 | Thale cress | nucleus | 35.38 | 28.66 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 25.38 | 28.45 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 20.77 | 28.42 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 25.38 | 28.21 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 20.77 | 27.69 |
| TraesCS7D01G548500.1 | Wheat | plastid | 25.0 | 27.66 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 16.54 | 27.56 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 24.23 | 27.39 |
| AT1G65330.1 | Thale cress | nucleus | 29.23 | 27.24 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 24.23 | 27.16 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 24.23 | 26.92 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 20.38 | 26.63 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 16.54 | 26.22 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 19.23 | 26.18 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 16.15 | 25.77 |
| OQU83806 | Sorghum | nucleus | 17.31 | 25.71 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 24.23 | 25.71 |
| Os03t0582400-01 | Rice | nucleus | 24.62 | 25.7 |
| KXG28892 | Sorghum | nucleus | 18.08 | 25.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.69 | 25.32 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 19.62 | 24.88 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 17.31 | 24.32 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 17.31 | 24.32 |
| PGSC0003DMT400003073 | Potato | cytosol | 10.0 | 24.07 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 16.92 | 23.91 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 16.92 | 23.78 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 25.38 | 23.74 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 19.23 | 23.7 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 19.23 | 23.7 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 20.77 | 23.58 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 22.69 | 23.51 |
| EES10067 | Sorghum | mitochondrion | 18.46 | 23.3 |
| KXG28893 | Sorghum | nucleus | 15.0 | 23.21 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 22.31 | 23.11 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 23.08 | 23.08 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 16.92 | 23.04 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 23.08 | 22.99 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 23.08 | 22.99 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 21.54 | 22.86 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 21.54 | 22.86 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 21.15 | 22.82 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 22.69 | 22.61 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 19.62 | 22.47 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 19.62 | 22.47 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 19.62 | 22.47 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 20.77 | 22.41 |
| EES06917 | Sorghum | mitochondrion, nucleus | 22.31 | 22.39 |
| AT5G27960.1 | Thale cress | nucleus | 27.31 | 22.19 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 18.08 | 22.17 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 19.23 | 22.03 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 20.38 | 21.99 |
| Zm00001d016791_P001 | Maize | mitochondrion | 24.23 | 21.95 |
| KXG32310 | Sorghum | nucleus | 20.38 | 21.9 |
| OQU83804 | Sorghum | mitochondrion | 19.62 | 21.7 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 19.62 | 21.61 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 19.62 | 21.61 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 20.0 | 21.58 |
| Zm00001d048894_P001 | Maize | mitochondrion | 20.38 | 21.46 |
| KXG28890 | Sorghum | mitochondrion | 20.77 | 21.18 |
| KXG28889 | Sorghum | nucleus | 20.0 | 20.8 |
| KXG28888 | Sorghum | nucleus | 20.38 | 20.78 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 19.23 | 20.75 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 18.08 | 20.7 |
| AT1G31630.1 | Thale cress | mitochondrion | 26.92 | 20.65 |
| AT5G26650.1 | Thale cress | nucleus | 28.85 | 20.49 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 14.62 | 20.21 |
| KXG38099 | Sorghum | plastid | 24.23 | 20.0 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 18.46 | 19.35 |
| EER91288 | Sorghum | mitochondrion, nucleus | 23.08 | 19.11 |
| AT5G26580.1 | Thale cress | nucleus | 25.0 | 18.84 |
| AT5G35120.1 | Thale cress | cytosol | 7.69 | 18.69 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 20.0 | 16.61 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 19.23 | 16.18 |
| AT1G31640.1 | Thale cress | mitochondrion | 28.85 | 16.16 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 19.62 | 15.79 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 18.46 | 15.48 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 19.23 | 15.48 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 18.46 | 15.34 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 18.85 | 15.22 |
| AT1G59930.1 | Thale cress | cytosol | 7.69 | 15.15 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 17.69 | 14.98 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 20.0 | 14.33 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 18.08 | 14.16 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 17.31 | 12.64 |
| PGSC0003DMT400089615 | Potato | cytosol | 4.62 | 5.04 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:819755 | ProteinID:AEE74306.1 | ArrayExpress:AT3G05860 | EnsemblPlantsGene:AT3G05860 |
| RefSeq:AT3G05860 | TAIR:AT3G05860 | RefSeq:AT3G05860-TAIR-G | EnsemblPlants:AT3G05860.1 | TAIR:AT3G05860.1 | Unigene:At.40604 |
| UniProt:F4J9K3 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | RefSeq:NP_187237.2 | PFAM:PF00319 | PO:PO:0009009 | PO:PO:0009089 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000034EF70 | : | : | : | : |
Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
Coordinates
chr3:-:1751385..1752407
Molecular Weight (calculated)
30418.1 Da
IEP (calculated)
7.729
GRAVY (calculated)
-0.908
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.