Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G342700.1 | Wheat | nucleus | 93.39 | 68.61 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 93.39 | 68.39 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 37.44 | 54.49 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 72.69 | 49.7 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 7.93 | 43.9 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 40.53 | 43.6 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 33.04 | 39.27 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 37.89 | 37.89 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 52.86 | 37.27 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 36.12 | 34.75 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 37.44 | 33.86 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 36.56 | 31.8 |
| KRG89836 | Soybean | nucleus | 20.7 | 31.54 |
| KRG88863 | Soybean | mitochondrion, nucleus | 18.5 | 30.0 |
| KRH33740 | Soybean | nucleus | 19.82 | 28.3 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 43.17 | 27.53 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 14.98 | 27.2 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 23.79 | 27.14 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 26.87 | 26.52 |
| KRG98152 | Soybean | nucleus | 22.03 | 26.32 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 26.87 | 26.29 |
| EES06917 | Sorghum | mitochondrion, nucleus | 28.63 | 25.1 |
| CDY33537 | Canola | nucleus | 21.59 | 25.0 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 25.55 | 25.0 |
| PGSC0003DMT400003073 | Potato | cytosol | 11.89 | 25.0 |
| CDY64992 | Canola | mitochondrion, nucleus | 16.74 | 24.68 |
| KRH30476 | Soybean | nucleus | 15.86 | 24.0 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 33.04 | 23.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.23 | 23.61 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 24.23 | 23.5 |
| KRH30113 | Soybean | nucleus | 17.62 | 23.39 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 25.11 | 23.27 |
| PGSC0003DMT400086956 | Potato | nucleus | 14.98 | 23.13 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 28.19 | 23.02 |
| AT5G26630.1 | Thale cress | nucleus | 22.03 | 22.94 |
| KRH72060 | Soybean | nucleus | 17.18 | 22.81 |
| KRG98150 | Soybean | mitochondrion, nucleus | 16.74 | 22.75 |
| CDY71896 | Canola | nucleus | 17.18 | 22.67 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 23.35 | 22.46 |
| KRH30119 | Soybean | cytosol | 15.86 | 22.36 |
| KRH30473 | Soybean | mitochondrion, nucleus | 21.59 | 22.17 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 15.86 | 22.09 |
| KRG98149 | Soybean | nucleus | 20.7 | 22.07 |
| KRH30472 | Soybean | nucleus | 20.26 | 21.7 |
| Bra012335.1-P | Field mustard | mitochondrion | 15.42 | 21.6 |
| Bra024521.1-P | Field mustard | mitochondrion | 15.42 | 21.6 |
| CDY04801 | Canola | mitochondrion, nucleus | 15.42 | 21.6 |
| CDY21372 | Canola | mitochondrion | 15.42 | 21.6 |
| CDY25744 | Canola | mitochondrion | 15.42 | 21.6 |
| Zm00001d016791_P001 | Maize | mitochondrion | 27.31 | 21.6 |
| KRG97962 | Soybean | nucleus | 22.47 | 21.34 |
| CDX88234 | Canola | nucleus | 17.18 | 21.31 |
| CDX80580 | Canola | nucleus | 18.94 | 21.29 |
| PGSC0003DMT400089787 | Potato | cytosol | 16.3 | 21.26 |
| KRH66114 | Soybean | nucleus | 18.5 | 21.21 |
| Bra009913.1-P | Field mustard | nucleus | 18.94 | 21.18 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 11.01 | 21.01 |
| Solyc01g102260.2.1 | Tomato | nucleus | 22.91 | 20.88 |
| KXG38099 | Sorghum | plastid | 28.63 | 20.63 |
| EER91288 | Sorghum | mitochondrion, nucleus | 28.19 | 20.38 |
| KRG98143 | Soybean | nucleus | 18.94 | 20.38 |
| KRH30919 | Soybean | nucleus | 21.59 | 20.25 |
| KRH66052 | Soybean | mitochondrion, nucleus | 19.82 | 20.0 |
| KRG98142 | Soybean | nucleus | 22.91 | 19.48 |
| KRG98147 | Soybean | mitochondrion, nucleus | 22.03 | 19.46 |
| KRG98148 | Soybean | nucleus | 19.38 | 19.21 |
| Bra020555.1-P | Field mustard | nucleus | 18.06 | 18.98 |
| CDY05540 | Canola | nucleus | 18.06 | 18.98 |
| CDY25000 | Canola | nucleus | 17.62 | 18.52 |
| PGSC0003DMT400090586 | Potato | nucleus | 18.94 | 18.3 |
| AT3G05860.1 | Thale cress | nucleus | 20.7 | 18.08 |
| PGSC0003DMT400073719 | Potato | nucleus | 20.7 | 18.01 |
| KRH72066 | Soybean | mitochondrion, nucleus | 16.3 | 17.96 |
| KRG88915 | Soybean | mitochondrion, nucleus | 16.3 | 17.87 |
| AT5G35120.1 | Thale cress | cytosol | 8.37 | 17.76 |
| AT1G65300.1 | Thale cress | nucleus | 21.59 | 17.63 |
| Bra018490.1-P | Field mustard | nucleus | 22.47 | 17.59 |
| CDX97329 | Canola | nucleus | 22.47 | 17.59 |
| PGSC0003DMT400089454 | Potato | nucleus | 18.94 | 17.55 |
| AT1G65330.1 | Thale cress | nucleus | 21.15 | 17.2 |
| CDY38696 | Canola | nucleus | 20.7 | 16.91 |
| AT1G59930.1 | Thale cress | cytosol | 9.69 | 16.67 |
| Bra035448.1-P | Field mustard | nucleus | 19.38 | 16.67 |
| Bra035449.1-P | Field mustard | nucleus | 18.94 | 16.29 |
| AT5G48670.1 | Thale cress | nucleus | 22.91 | 16.2 |
| Bra029469.1-P | Field mustard | nucleus | 21.59 | 16.12 |
| CDY60402 | Canola | nucleus | 21.59 | 16.12 |
| CDY27735 | Canola | nucleus | 18.94 | 16.1 |
| KRH30471 | Soybean | nucleus | 21.15 | 15.84 |
| KRG88862 | Soybean | nucleus | 21.15 | 15.34 |
| Bra039404.1-P | Field mustard | nucleus | 20.26 | 15.23 |
| CDY18830 | Canola | nucleus | 22.47 | 14.83 |
| PGSC0003DMT400088489 | Potato | nucleus | 13.66 | 14.55 |
| PGSC0003DMT400095062 | Potato | nucleus | 18.06 | 14.54 |
| KRG98146 | Soybean | nucleus | 20.7 | 14.33 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.05 | 14.29 |
| KRG88914 | Soybean | cytosol | 13.66 | 14.16 |
| AT2G28700.1 | Thale cress | nucleus | 19.82 | 13.68 |
| CDX80577 | Canola | mitochondrion, nucleus | 18.06 | 13.62 |
| PGSC0003DMT400091650 | Potato | nucleus | 15.42 | 13.51 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.49 | 13.28 |
| CDY71564 | Canola | nucleus | 19.38 | 12.98 |
| PGSC0003DMT400061726 | Potato | nucleus | 18.5 | 12.84 |
| PGSC0003DMT400090953 | Potato | nucleus | 18.94 | 12.8 |
| CDY05207 | Canola | nucleus | 18.5 | 12.57 |
| PGSC0003DMT400088654 | Potato | nucleus | 18.06 | 12.54 |
| AT5G27960.1 | Thale cress | nucleus | 17.62 | 12.5 |
| AT1G31630.1 | Thale cress | mitochondrion | 18.5 | 12.39 |
| Bra040248.1-P | Field mustard | nucleus | 22.47 | 12.35 |
| CDX88231 | Canola | nucleus | 14.98 | 12.32 |
| Bra020552.1-P | Field mustard | nucleus | 18.5 | 12.32 |
| PGSC0003DMT400095755 | Potato | nucleus | 18.5 | 12.21 |
| CDY70782 | Canola | nucleus | 17.18 | 12.07 |
| AT5G26650.1 | Thale cress | nucleus | 19.38 | 12.02 |
| PGSC0003DMT400088008 | Potato | nucleus | 10.13 | 11.92 |
| CDY27734 | Canola | nucleus | 17.62 | 11.9 |
| AT5G26580.1 | Thale cress | nucleus | 18.06 | 11.88 |
| PGSC0003DMT400090516 | Potato | nucleus | 9.25 | 11.86 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 19.82 | 11.75 |
| Bra041022.1-P | Field mustard | nucleus | 17.18 | 11.68 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 18.5 | 11.54 |
| PGSC0003DMT400085256 | Potato | nucleus | 18.94 | 11.38 |
| PGSC0003DMT400077258 | Potato | nucleus | 18.94 | 11.03 |
| PGSC0003DMT400086447 | Potato | cytosol | 9.25 | 10.94 |
| CDY05333 | Canola | nucleus | 18.06 | 10.88 |
| CDY05515 | Canola | nucleus | 18.06 | 10.88 |
| Solyc07g043080.1.1 | Tomato | cytosol | 5.73 | 10.48 |
| Bra020525.1-P | Field mustard | nucleus | 18.06 | 10.38 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 15.86 | 10.32 |
| PGSC0003DMT400085623 | Potato | nucleus | 8.81 | 10.0 |
| Bra020550.1-P | Field mustard | nucleus | 16.3 | 9.74 |
| Bra020524.1-P | Field mustard | nucleus | 15.42 | 9.72 |
| CDY05514 | Canola | nucleus | 15.42 | 9.72 |
| CDY67043 | Canola | nucleus | 16.3 | 9.46 |
| AT1G31640.1 | Thale cress | mitochondrion | 17.62 | 8.62 |
| PGSC0003DMT400086919 | Potato | nucleus | 8.37 | 7.72 |
| PGSC0003DMT400094378 | Potato | nucleus | 4.41 | 6.41 |
| PGSC0003DMT400094113 | Potato | cytosol | 4.85 | 6.36 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 7.49 | 6.03 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 3.52 | 4.91 |
| PGSC0003DMT400089615 | Potato | cytosol | 3.52 | 3.36 |
| PGSC0003DMT400065010 | Potato | vacuole | 1.76 | 2.0 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 1.32 | 1.49 |
| PGSC0003DMT400061722 | Potato | plastid | 0.0 | 0.0 |
| PGSC0003DMT400091747 | Potato | plastid | 0.0 | 0.0 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6A01G359700 | EnsemblPlants:TraesCS6A01G359700.1 |
| TIGR:cd00266 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:591089875..591090558
Molecular Weight (calculated)
25367.7 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.492
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKKIALQY IKNKSSRRRT LDTRMKNLAS KAREVSILCN AKACVLVYDE GNAAPKVYPS HPEAVDILNR YKTMADGRFK KTVNQEDFLS QRLSKLQVEE
101: NKVRDPEIRI LLHKAMLGSD LPDLKVDELT IVSSRLEEIL KSVGQSIAKI SGQTPVLQPQ VPYIPDNMDM GGSSAMYLAS QPAPYVTNNM DMGSFAMNQQ
201: PSPTPYVTDN MHVGSPTMYQ VPPQHEG
101: NKVRDPEIRI LLHKAMLGSD LPDLKVDELT IVSSRLEEIL KSVGQSIAKI SGQTPVLQPQ VPYIPDNMDM GGSSAMYLAS QPAPYVTNNM DMGSFAMNQQ
201: PSPTPYVTDN MHVGSPTMYQ VPPQHEG
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.