CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88448
KRG89812
KRG91147
KRG91148
KRG91149
KRG91150
KRG94975
KRH18664
KRH22644
KRH28025
KRH31638
KRH32873
KRH32900
KRH32901
KRH32904
KRH32908
KRH32909
KRH32910
KRH32912
KRH32915
KRH32916
KRH32917
KRH32946
KRH33030
KRH35626
KRH35627
KRH35628
KRH35629
KRH69070
KRH71935
KRH72042
KRH72146
KRH72149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48670.1	KRG91150	AT2G24840.1	18599653
AT5G48670.1	KRH35626	AT2G24840.1	18599653
AT5G48670.1	KRG91150	AT2G24840.1	18713950
AT5G48670.1	KRH35626	AT2G24840.1	18713950
AT5G48670.1	KRG89812	AT2G41090.1	17360592
AT5G48670.1	KRG94975	AT2G41090.1	17360592
AT5G48670.1	KRH18664	AT2G41090.1	17360592
AT5G48670.1	KRG89812	AT2G41100.1	17360592
AT5G48670.1	KRG94975	AT2G41100.1	17360592
AT5G48670.1	KRH18664	AT2G41100.1	17360592
AT5G48670.1	KRH31638	AT4G14640.1	17360592
AT5G48670.1	KRH69070	AT4G14640.1	17360592
AT5G48670.1	KRG89812	AT5G21274.1	17360592
AT5G48670.1	KRG94975	AT5G21274.1	17360592
AT5G48670.1	KRH18664	AT5G21274.1	17360592
AT5G48670.1	KRG88448	AT5G60440.1	15805477
AT5G48670.1	KRG91147	AT5G60440.1	15805477
AT5G48670.1	KRG91148	AT5G60440.1	15805477
AT5G48670.1	KRG91149	AT5G60440.1	15805477
AT5G48670.1	KRH22644	AT5G60440.1	15805477
AT5G48670.1	KRH28025	AT5G60440.1	15805477
AT5G48670.1	KRH32873	AT5G60440.1	15805477
AT5G48670.1	KRH32900	AT5G60440.1	15805477
AT5G48670.1	KRH32901	AT5G60440.1	15805477
AT5G48670.1	KRH32904	AT5G60440.1	15805477
AT5G48670.1	KRH32908	AT5G60440.1	15805477
AT5G48670.1	KRH32909	AT5G60440.1	15805477
AT5G48670.1	KRH32910	AT5G60440.1	15805477
AT5G48670.1	KRH32912	AT5G60440.1	15805477
AT5G48670.1	KRH32915	AT5G60440.1	15805477
AT5G48670.1	KRH32916	AT5G60440.1	15805477
AT5G48670.1	KRH32917	AT5G60440.1	15805477
AT5G48670.1	KRH32946	AT5G60440.1	15805477
AT5G48670.1	KRH33030	AT5G60440.1	15805477
AT5G48670.1	KRH35627	AT5G60440.1	15805477
AT5G48670.1	KRH35628	AT5G60440.1	15805477
AT5G48670.1	KRH35629	AT5G60440.1	15805477
AT5G48670.1	KRH71935	AT5G60440.1	15805477
AT5G48670.1	KRH72042	AT5G60440.1	15805477
AT5G48670.1	KRH72146	AT5G60440.1	15805477
AT5G48670.1	KRH72149	AT5G60440.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30472	Soybean	nucleus	95.71	63.21
GSMUA_Achr2P18410_001	Banana	nucleus	17.86	60.98
KRG89836	Soybean	nucleus	46.43	43.62
AT5G27810.1	Thale cress	cytosol, nucleus, plastid	32.86	38.66
KRG98150	Soybean	mitochondrion, nucleus	43.57	36.53
KRG98148	Soybean	nucleus	59.29	36.24
CDY33537	Canola	nucleus	50.71	36.22
KRH33740	Soybean	nucleus	40.71	35.85
KRH30476	Soybean	nucleus	37.86	35.33
HORVU6Hr1G003730.1	Barley	nucleus	21.43	35.29
KRH30473	Soybean	mitochondrion, nucleus	55.0	34.84
KRG98152	Soybean	nucleus	47.14	34.74
KRH72060	Soybean	nucleus	42.14	34.5
KRH30119	Soybean	cytosol	39.29	34.16
KRG98147	Soybean	mitochondrion, nucleus	62.14	33.85
KRH30113	Soybean	nucleus	40.0	32.75
KRH66114	Soybean	nucleus	45.71	32.32
KRG98149	Soybean	nucleus	47.86	31.46
KRG97962	Soybean	nucleus	53.57	31.38
KRH30919	Soybean	nucleus	53.57	30.99
VIT_14s0060g00300.t01	Wine grape	nucleus	52.14	30.93
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	34.29	30.77
KRG98142	Soybean	nucleus	57.14	29.96
GSMUA_Achr3P05500_001	Banana	nucleus	46.43	29.41
KRG98143	Soybean	nucleus	42.86	28.44
Solyc01g102260.2.1	Tomato	nucleus	50.0	28.11
TraesCS3D01G138400.1	Wheat	cytosol	37.86	27.89
KRH66052	Soybean	mitochondrion, nucleus	43.57	27.11
KRH30471	Soybean	nucleus	58.57	27.06
KRG88915	Soybean	mitochondrion, nucleus	40.0	27.05
TraesCS3B01G155200.1	Wheat	cytosol	37.14	26.67
GSMUA_Achr3P08500_001	Banana	nucleus	43.57	26.52
TraesCS7B01G484600.1	Wheat	nucleus	30.71	26.22
GSMUA_AchrUn_...	Banana	nucleus	43.57	26.18
TraesCS3A01G137500.1	Wheat	cytosol	37.14	26.13
KRG98146	Soybean	nucleus	59.29	25.3
KRG88862	Soybean	nucleus	56.43	25.24
GSMUA_Achr2P18400_001	Banana	nucleus	41.43	25.0
Bra018490.1-P	Field mustard	nucleus	50.71	24.48
CDX97329	Canola	nucleus	50.71	24.48
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	32.14	24.46
KXG28892	Sorghum	nucleus	32.14	24.32
KRH72066	Soybean	mitochondrion, nucleus	35.71	24.27
GSMUA_Achr3P24560_001	Banana	nucleus	40.0	24.14
Bra029469.1-P	Field mustard	nucleus	51.43	23.68
CDY60402	Canola	nucleus	51.43	23.68
OQU83806	Sorghum	nucleus	29.29	23.43
TraesCS6B01G028100.1	Wheat	mitochondrion	30.71	22.87
TraesCS2B01G171700.1	Wheat	mitochondrion	30.71	22.51
TraesCS7A01G559500.1	Wheat	nucleus	30.71	22.51
AT5G48670.1	Thale cress	nucleus	51.43	22.43
TraesCS7B01G484000.1	Wheat	nucleus	29.29	22.16
Os03t0582400-01	Rice	nucleus	39.29	22.09
KXG28893	Sorghum	nucleus	26.43	22.02
EES10067	Sorghum	mitochondrion	32.14	21.84
TraesCS6A01G020900.1	Wheat	mitochondrion	32.86	21.8
TraesCS6B01G028300.1	Wheat	mitochondrion	32.86	21.8
TraesCS7D01G548500.1	Wheat	plastid	36.43	21.7
TraesCS7D01G550500.1	Wheat	nucleus	28.57	21.62
TraesCS6D01G023800.1	Wheat	mitochondrion	35.0	21.59
TraesCS7A01G561000.1	Wheat	nucleus	35.71	21.37
GSMUA_Achr8P06150_001	Banana	nucleus	37.14	21.22
TraesCS6B01G027900.1	Wheat	nucleus	34.29	21.15
HORVU7Hr1G121600.1	Barley	nucleus	27.86	21.08
HORVU6Hr1G085540.1	Barley	mitochondrion	34.29	20.96
TraesCS7B01G485400.1	Wheat	nucleus	35.0	20.94
TraesCS3B01G159600.1	Wheat	nucleus	37.14	20.72
EES06917	Sorghum	mitochondrion, nucleus	37.86	20.46
TraesCS6B01G391600.1	Wheat	nucleus	35.71	20.41
TraesCS6B01G391700.1	Wheat	nucleus	35.71	20.41
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	37.86	20.38
TraesCS6A01G358900.1	Wheat	nucleus	34.29	20.34
TraesCS6D01G342000.1	Wheat	nucleus	35.0	20.33
TraesCS3A01G312600.1	Wheat	nucleus	36.43	20.32
Zm00001d013792_P001	Maize	mitochondrion, nucleus	40.0	20.14
OQU83804	Sorghum	mitochondrion	33.57	20.0
TraesCS6A01G359100.1	Wheat	mitochondrion	37.14	19.92
TraesCS6B01G391800.1	Wheat	mitochondrion	37.14	19.92
TraesCS6D01G342100.1	Wheat	mitochondrion	37.14	19.92
TraesCS6D01G341700.1	Wheat	nucleus	34.29	19.92
Bra041022.1-P	Field mustard	nucleus	47.14	19.76
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	35.0	19.76
CDY27734	Canola	nucleus	47.14	19.64
HORVU2Hr1G022060.1	Barley	nucleus, plastid	28.57	19.51
Zm00001d016791_P001	Maize	mitochondrion	40.0	19.51
KXG32310	Sorghum	nucleus	33.57	19.42
TraesCS6D01G024300.1	Wheat	mitochondrion	31.43	19.38
CDY05207	Canola	nucleus	45.71	19.16
TraesCS6A01G022700.1	Wheat	mitochondrion	30.71	18.94
KXG28890	Sorghum	mitochondrion	34.29	18.82
KRG88914	Soybean	cytosol	29.29	18.72
TraesCS6A01G359700.1	Wheat	nucleus	30.0	18.5
KXG28889	Sorghum	nucleus	32.86	18.4
TraesCS2D01G128000.1	Wheat	nucleus	27.86	18.4
Zm00001d048894_P001	Maize	mitochondrion	32.14	18.22
KXG38099	Sorghum	plastid	40.71	18.1
KXG28888	Sorghum	nucleus	32.86	18.04
TraesCS7B01G484500.1	Wheat	nucleus	30.0	17.43
TraesCS7D01G551000.1	Wheat	nucleus	29.29	17.37
EER91288	Sorghum	mitochondrion, nucleus	38.57	17.2
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	29.29	17.01
TraesCS7D01G550600.1	Wheat	nucleus	29.29	17.01
TraesCS6D01G342700.1	Wheat	nucleus	32.14	14.56
TraesCS7A01G551000.1	Wheat	nucleus	32.14	14.38
TraesCS7D01G536700.1	Wheat	nucleus	31.43	14.06
TraesCS6B01G392600.1	Wheat	nucleus	30.0	13.55
TraesCS7A01G398800.1	Wheat	nucleus	30.0	13.04
TraesCS7B01G299400.1	Wheat	nucleus	29.29	12.69
TraesCS7D01G393000.1	Wheat	nucleus	28.57	12.38
HORVU6Hr1G085670.1	Barley	nucleus	27.86	11.75
TraesCS2D01G150900.1	Wheat	mitochondrion	25.71	11.73
TraesCS2A01G146400.1	Wheat	mitochondrion	27.86	10.96
TraesCS2B01G146100.1	Wheat	nucleus	26.43	10.19

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:GLYMA_U024500	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:K7LR40	EnsemblPlants:KRG88863	ProteinID:KRG88863	ProteinID:KRG88863.1
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF153
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002948C69	SEG:seg

Description

hypothetical protein

Coordinates

chrscaffold_22:-:1223854..1224291

Molecular Weight (calculated)

16015.7 Da

IEP (calculated)

10.417

GRAVY (calculated)

-0.594

Length

140 amino acids

Sequence
(BLAST)

001: MGRKKVKLAL IANNTKRITT FRKRKKSLMK KAEELNTLCG IEACRDKPEP EVWPSELGVL SVVERFRSRP ELDQSRKKVN QESFVSQSIV KGQDRLQKVV
101: KENKEIEMSS FMTQCLNIGN VQPCKNMTTA DLNVLSSMIE

Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)

001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H

Arabidopsis Description

AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.