CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88862
KRG88863
KRG88914
KRG88915
KRG89836
KRG97962
KRG98142
KRG98143
KRG98146
KRG98147
KRG98148
KRG98149
KRG98150
KRG98152
KRH30113
KRH30119
KRH30471
KRH30472
KRH30473
KRH30476
KRH30919
KRH66052
KRH66114
KRH72060
KRH72066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60440.1	KRG88862	AT5G48670.1	15805477
AT5G60440.1	KRG88863	AT5G48670.1	15805477
AT5G60440.1	KRG88914	AT5G48670.1	15805477
AT5G60440.1	KRG88915	AT5G48670.1	15805477
AT5G60440.1	KRG89836	AT5G48670.1	15805477
AT5G60440.1	KRG97962	AT5G48670.1	15805477
AT5G60440.1	KRG98142	AT5G48670.1	15805477
AT5G60440.1	KRG98143	AT5G48670.1	15805477
AT5G60440.1	KRG98146	AT5G48670.1	15805477
AT5G60440.1	KRG98147	AT5G48670.1	15805477
AT5G60440.1	KRG98148	AT5G48670.1	15805477
AT5G60440.1	KRG98149	AT5G48670.1	15805477
AT5G60440.1	KRG98150	AT5G48670.1	15805477
AT5G60440.1	KRG98152	AT5G48670.1	15805477
AT5G60440.1	KRH30113	AT5G48670.1	15805477
AT5G60440.1	KRH30119	AT5G48670.1	15805477
AT5G60440.1	KRH30471	AT5G48670.1	15805477
AT5G60440.1	KRH30472	AT5G48670.1	15805477
AT5G60440.1	KRH30473	AT5G48670.1	15805477
AT5G60440.1	KRH30476	AT5G48670.1	15805477
AT5G60440.1	KRH30919	AT5G48670.1	15805477
AT5G60440.1	KRH66052	AT5G48670.1	15805477
AT5G60440.1	KRH66114	AT5G48670.1	15805477
AT5G60440.1	KRH72060	AT5G48670.1	15805477
AT5G60440.1	KRH72066	AT5G48670.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91148	Soybean	nucleus	83.81	85.54
KRG91147	Soybean	nucleus	80.97	83.68
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	14.57	64.29
KRH22644	Soybean	nucleus	35.22	62.59
VIT_01s0010g01500.t01	Wine grape	nucleus	25.51	61.16
KRH35627	Soybean	mitochondrion	52.23	52.23
KRG91149	Soybean	mitochondrion	49.39	50.41
VIT_03s0088g00550.t01	Wine grape	nucleus	43.32	50.23
VIT_03s0088g00600.t01	Wine grape	nucleus	42.11	48.6
KRH32912	Soybean	nucleus	34.01	48.55
PGSC0003DMT400013136	Potato	nucleus	38.46	48.22
KRH32909	Soybean	nucleus	33.2	47.4
KRH32910	Soybean	nucleus	34.01	47.19
KRH32917	Soybean	nucleus	34.01	47.19
VIT_03s0088g00510.t01	Wine grape	nucleus	42.51	46.88
KRH32901	Soybean	nucleus	32.79	46.82
KRH32915	Soybean	nucleus	32.79	46.82
KRH32946	Soybean	nucleus	32.79	46.82
KRH32900	Soybean	nucleus	32.79	46.82
KRH32904	Soybean	nucleus	32.39	46.24
KRH32916	Soybean	nucleus	32.39	46.24
KRG88448	Soybean	nucleus	32.39	46.24
CDY69485	Canola	nucleus	22.27	44.35
CDY71457	Canola	nucleus	21.86	43.55
KRH35629	Soybean	nucleus	36.84	43.13
KRH33030	Soybean	nucleus	19.43	42.48
KRG91150	Soybean	nucleus	38.06	41.59
KRH71935	Soybean	nucleus	29.55	41.24
KRH35626	Soybean	nucleus	37.25	40.71
KRH72149	Soybean	mitochondrion	27.53	40.24
KRH72042	Soybean	extracellular	16.6	39.81
KRH32873	Soybean	nucleus	34.01	38.71
KRH28025	Soybean	nucleus	26.32	38.69
KRH02077	Soybean	nucleus	27.13	37.22
KRH41505	Soybean	cytosol, nucleus, plastid	23.89	36.65
AT5G60440.1	Thale cress	nucleus	42.91	35.45
CDY24623	Canola	nucleus	40.49	35.34
CDX95426	Canola	nucleus	39.27	35.14
KRH60217	Soybean	nucleus	25.1	35.03
CDY42198	Canola	nucleus	38.87	34.78
Bra022434.1-P	Field mustard	nucleus	39.68	34.63
AT1G65360.1	Thale cress	nucleus	31.17	34.07
Bra002480.1-P	Field mustard	nucleus	38.46	34.05
CDY61930	Canola	nucleus	38.46	34.05
CDY46165	Canola	nucleus	38.87	33.92
CDY09199	Canola	nucleus	34.01	33.87
CDY31547	Canola	nucleus	38.06	33.69
Bra038225.1-P	Field mustard	nucleus	35.22	33.33
Bra011938.1-P	Field mustard	nucleus	31.98	33.19
KRH72146	Soybean	nucleus	25.51	33.16
CDY09205	Canola	nucleus	37.65	33.1
AT4G36590.1	Thale cress	nucleus	33.2	33.06
KRG91151	Soybean	nucleus	26.72	33.0
CDY04574	Canola	nucleus	31.58	32.77
Bra020242.1-P	Field mustard	nucleus	32.79	32.66
CDY28567	Canola	mitochondrion, nucleus	32.79	32.66
CDY09204	Canola	nucleus	32.79	32.53
KRH32908	Soybean	nucleus	11.74	32.22
AT1G01530.1	Thale cress	nucleus	31.98	31.98
Bra020247.1-P	Field mustard	cytosol	34.82	31.97
CDY15761	Canola	nucleus	28.74	31.84
KRH60216	Soybean	nucleus	23.08	30.81
KRG99424	Soybean	nucleus	22.67	30.77
CDY31718	Canola	nucleus	29.15	30.13
KRH45604	Soybean	nucleus	22.67	29.63
KRH41503	Soybean	nucleus	18.22	28.12
GSMUA_Achr5P01940_001	Banana	nucleus	25.91	26.23
GSMUA_Achr4P28260_001	Banana	nucleus	24.7	24.8
Bra035685.1-P	Field mustard	nucleus	27.13	22.87
KRH06269	Soybean	nucleus	21.86	21.26
KRH47706	Soybean	nucleus	21.86	21.18
Bra020245.1-P	Field mustard	nucleus	11.74	20.71
Bra022446.1-P	Field mustard	cytosol	16.19	20.41
CDY51695	Canola	cytosol	16.19	20.41
GSMUA_Achr5P01990_001	Banana	nucleus	28.34	20.17
Bra020246.1-P	Field mustard	cytosol	13.77	20.0
KRH47704	Soybean	nucleus	23.08	19.86
KRH47701	Soybean	nucleus	22.67	19.72

Protein Annotations

EntrezGene:100794751	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02006695	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G254800
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	UniProt:I1LEB5	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH35628	ProteinID:KRH35628
ProteinID:KRH35628.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000233CDAB

Description

hypothetical protein

Coordinates

chr10:-:48191749..48192492

Molecular Weight (calculated)

27797.7 Da

IEP (calculated)

10.440

GRAVY (calculated)

-0.466

Length

247 amino acids

Sequence
(BLAST)

001: MSGPKKSRGR QKIEMKKMSN ESNLQVTFSK RRNGLFKKAS ELCTLCGTDV ALVVFSPGQK VFSFGHPNVD AVIDRYLARP PPTDSGTMQI IEAHRMAHVH
101: DLNVQLTQIN NQLDHERKRT NELNLMNKEA QAQMWWARPV DGMSMAQVKQ FKAALEEMKK QVARLVDRAM LQSVTNPTLQ FFPGVSSSSN SNLVHQPHPL
201: PAPQVFTPHL IQPPMLQNFM FHDGSMMRHH GFDNIGMGGY GPTAGFF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.