Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G01530.1 | Thale cress | nucleus | 68.58 | 62.75 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 15.04 | 60.71 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 22.12 | 48.54 |
| KRH22644 | Soybean | nucleus | 23.89 | 38.85 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 34.51 | 36.62 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 34.51 | 36.45 |
| PGSC0003DMT400013136 | Potato | nucleus | 31.42 | 36.04 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 33.63 | 33.93 |
| KRG91147 | Soybean | nucleus | 34.96 | 33.05 |
| KRG91148 | Soybean | nucleus | 34.96 | 32.64 |
| KRH32946 | Soybean | nucleus | 24.78 | 32.37 |
| Bra011938.1-P | Field mustard | nucleus | 33.63 | 31.93 |
| CDY04574 | Canola | nucleus | 33.19 | 31.51 |
| KRH32912 | Soybean | nucleus | 23.89 | 31.21 |
| KRH32916 | Soybean | nucleus | 23.89 | 31.21 |
| KRH32901 | Soybean | nucleus | 23.89 | 31.21 |
| KRH35628 | Soybean | nucleus | 34.07 | 31.17 |
| KRH72042 | Soybean | extracellular | 14.16 | 31.07 |
| AT4G36590.1 | Thale cress | nucleus | 34.07 | 31.05 |
| CDY15761 | Canola | nucleus | 30.53 | 30.94 |
| KRH32917 | Soybean | nucleus | 24.34 | 30.9 |
| KRH32909 | Soybean | nucleus | 23.45 | 30.64 |
| KRH32900 | Soybean | nucleus | 23.45 | 30.64 |
| KRH32910 | Soybean | nucleus | 23.89 | 30.34 |
| KRH33030 | Soybean | nucleus | 15.04 | 30.09 |
| KRH32915 | Soybean | nucleus | 23.01 | 30.06 |
| KRG88448 | Soybean | nucleus | 23.01 | 30.06 |
| KRH32904 | Soybean | nucleus | 23.01 | 30.06 |
| KRH72149 | Soybean | mitochondrion | 22.12 | 29.59 |
| AT5G60440.1 | Thale cress | nucleus | 38.5 | 29.1 |
| AT2G34440.1 | Thale cress | nucleus | 22.12 | 29.07 |
| KRH32873 | Soybean | nucleus | 27.88 | 29.03 |
| CDY31718 | Canola | nucleus | 30.53 | 28.87 |
| AT3G66656.1 | Thale cress | nucleus | 22.57 | 28.65 |
| KRG91149 | Soybean | mitochondrion | 29.65 | 27.69 |
| KRH28025 | Soybean | nucleus | 20.35 | 27.38 |
| AT2G24840.1 | Thale cress | nucleus | 30.97 | 26.52 |
| KRH71935 | Soybean | nucleus | 20.35 | 25.99 |
| KRH35627 | Soybean | mitochondrion | 28.32 | 25.91 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 26.99 | 25.0 |
| KRH35629 | Soybean | nucleus | 22.12 | 23.7 |
| KRH72146 | Soybean | nucleus | 19.47 | 23.16 |
| AT1G28460.1 | Thale cress | nucleus | 17.7 | 21.98 |
| AT1G29962.1 | Thale cress | nucleus | 17.7 | 21.62 |
| Bra035685.1-P | Field mustard | nucleus | 27.43 | 21.16 |
| AT1G72350.1 | Thale cress | nucleus | 20.35 | 20.54 |
| AT1G17310.2 | Thale cress | nucleus | 20.35 | 20.18 |
| KRH32908 | Soybean | nucleus | 7.96 | 20.0 |
| AT1G28450.1 | Thale cress | nucleus | 16.37 | 20.0 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 21.68 | 19.92 |
| AT1G54760.1 | Thale cress | nucleus | 13.27 | 18.63 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 24.34 | 15.85 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:842846 | ProteinID:AAC27145.1 | ProteinID:AEE34365.1 | Symbol:AGL23 |
| ArrayExpress:AT1G65360 | EnsemblPlantsGene:AT1G65360 | RefSeq:AT1G65360 | TAIR:AT1G65360 | RefSeq:AT1G65360-TAIR-G | EnsemblPlants:AT1G65360.1 |
| TAIR:AT1G65360.1 | EMBL:AY141230 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009553 | GO:GO:0009658 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | RefSeq:NP_176715.1 |
| UniProt:O80807 | PFAM:PF00319 | PO:PO:0001054 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009032 | PO:PO:0009089 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020090 | PO:PO:0020100 | PO:PO:0025074 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00000AA777 | SEG:seg | : | : | : |
Description
AGL23Agamous-like MADS-box protein AGL23 [Source:UniProtKB/Swiss-Prot;Acc:O80807]
Coordinates
chr1:+:24281337..24282233
Molecular Weight (calculated)
25338.3 Da
IEP (calculated)
9.669
GRAVY (calculated)
-0.483
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.