Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68270 | Canola | cytosol, nucleus, plastid | 63.84 | 67.45 |
| Bra003884.1-P | Field mustard | cytosol | 63.84 | 67.45 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 62.95 | 66.51 |
| CDX72908 | Canola | nucleus | 61.61 | 64.79 |
| AT1G17310.2 | Thale cress | nucleus | 53.12 | 52.19 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 19.64 | 30.14 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 21.88 | 27.53 |
| Os12t0407000-00 | Rice | mitochondrion | 23.21 | 26.8 |
| Os06t0504100-00 | Rice | mitochondrion | 24.55 | 26.19 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 20.98 | 25.97 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 16.96 | 25.33 |
| Zm00001d007891_P001 | Maize | nucleus | 21.43 | 25.0 |
| KXG20143 | Sorghum | nucleus | 20.09 | 24.46 |
| TraesCS7D01G337200.1 | Wheat | plastid | 20.98 | 24.35 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 20.54 | 24.34 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 18.75 | 24.28 |
| AT1G28460.1 | Thale cress | nucleus | 19.64 | 24.18 |
| KXG21744 | Sorghum | nucleus | 21.43 | 24.12 |
| TraesCS7A01G342300.1 | Wheat | plastid | 20.98 | 23.86 |
| TraesCS7B01G240500.1 | Wheat | plastid | 20.54 | 23.83 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 18.3 | 23.7 |
| Zm00001d042550_P001 | Maize | nucleus | 19.64 | 23.4 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 17.86 | 23.39 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 20.54 | 23.35 |
| TraesCS7B01G211300.1 | Wheat | plastid | 20.09 | 22.96 |
| TraesCS7D01G337000.1 | Wheat | plastid | 20.09 | 22.96 |
| PGSC0003DMT400002920 | Potato | nucleus | 17.86 | 22.73 |
| AT2G24840.1 | Thale cress | nucleus | 26.79 | 22.73 |
| AT2G34440.1 | Thale cress | nucleus | 17.41 | 22.67 |
| TraesCS7B01G240400.1 | Wheat | plastid | 19.64 | 22.45 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 20.98 | 22.38 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 20.98 | 22.38 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 19.2 | 22.16 |
| AT1G29962.1 | Thale cress | nucleus | 18.3 | 22.16 |
| AT1G28450.1 | Thale cress | nucleus | 18.3 | 22.16 |
| Solyc11g069770.1.1 | Tomato | nucleus | 17.41 | 21.55 |
| EER88419 | Sorghum | nucleus | 20.54 | 21.4 |
| AT4G36590.1 | Thale cress | nucleus | 23.66 | 21.37 |
| AT3G66656.1 | Thale cress | nucleus | 16.96 | 21.35 |
| EER89159 | Sorghum | nucleus | 21.43 | 20.96 |
| AT1G65360.1 | Thale cress | nucleus | 20.54 | 20.35 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 21.88 | 19.92 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 21.88 | 19.92 |
| AT1G01530.1 | Thale cress | nucleus | 21.88 | 19.84 |
| AT5G60440.1 | Thale cress | nucleus | 24.55 | 18.39 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 21.43 | 17.98 |
| HORVU5Hr1G110470.1 | Barley | plastid | 19.2 | 17.34 |
| KRH47706 | Soybean | nucleus | 19.2 | 16.86 |
| KRH06269 | Soybean | nucleus | 18.75 | 16.54 |
| KRH47701 | Soybean | nucleus | 20.09 | 15.85 |
| AT1G54760.1 | Thale cress | nucleus | 11.16 | 15.53 |
| KRH47704 | Soybean | nucleus | 18.75 | 14.63 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:843567 | UniProt:A0A178WJB6 | ProteinID:AAG52570.1 | ProteinID:AEE35309.1 |
| ArrayExpress:AT1G72350 | EnsemblPlantsGene:AT1G72350 | RefSeq:AT1G72350 | TAIR:AT1G72350 | RefSeq:AT1G72350-TAIR-G | EnsemblPlants:AT1G72350.1 |
| TAIR:AT1G72350.1 | EMBL:AY141235 | Unigene:At.64898 | EMBL:BT025647 | EMBL:DQ446421 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_177379.1 | ProteinID:OAP17625.1 |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF164 | UniProt:Q9C9D4 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A34D6 | SEG:seg |
Description
At1g72350 [Source:UniProtKB/TrEMBL;Acc:Q9C9D4]
Coordinates
chr1:-:27239273..27239947
Molecular Weight (calculated)
25514.6 Da
IEP (calculated)
9.355
GRAVY (calculated)
-0.729
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.