Factsheet for VIT_10s0003g03970.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06590.t01	Wine grape	nucleus	98.57	98.57
VIT_01s0010g01500.t01	Wine grape	nucleus	21.43	43.69
KRH02077	Soybean	nucleus	33.81	39.44
KRG91151	Soybean	nucleus	34.29	36.0
GSMUA_Achr4P11900_001	Banana	nucleus	24.76	35.62
VIT_01s0010g01530.t01	Wine grape	nucleus	30.48	32.99
PGSC0003DMT400090024	Potato	nucleus	26.19	32.16
Solyc01g106700.2.1	Tomato	nucleus	32.38	31.92
VIT_03s0088g00600.t01	Wine grape	nucleus	32.38	31.78
VIT_03s0088g00550.t01	Wine grape	nucleus	30.95	30.52
VIT_03s0088g00590.t01	Wine grape	nucleus	30.95	30.37
VIT_03s0088g00610.t01	Wine grape	cytosol	30.95	29.68
VIT_00s0386g00010.t01	Wine grape	nucleus	28.57	29.56
Solyc04g064860.1.1	Tomato	plastid	31.9	28.76
Zm00001d042550_P001	Maize	nucleus	25.24	28.19
VIT_03s0088g00510.t01	Wine grape	nucleus	30.0	28.12
HORVU7Hr1G081190.1	Barley	nucleus	20.0	28.0
TraesCS5B01G471900.1	Wheat	mitochondrion	22.86	27.75
KXG20143	Sorghum	nucleus	24.29	27.72
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	22.38	27.17
TraesCS7D01G337200.1	Wheat	plastid	24.76	26.94
TraesCS7A01G342300.1	Wheat	plastid	25.24	26.9
Zm00001d007891_P001	Maize	nucleus	24.29	26.56
TraesCS1D01G062500.1	Wheat	nucleus	22.86	26.52
TraesCS7B01G240500.1	Wheat	plastid	24.29	26.42
TraesCS1B01G080200.1	Wheat	nucleus	22.38	26.4
TraesCS1A01G061800.1	Wheat	nucleus	21.43	26.32
TraesCS1A01G013100.1	Wheat	nucleus	23.33	25.93
TraesCS7A01G342600.1	Wheat	nucleus, plastid	24.29	25.89
Os06t0504100-00	Rice	mitochondrion	25.71	25.71
TraesCS7B01G211300.1	Wheat	plastid	23.81	25.51
TraesCS7D01G337000.1	Wheat	plastid	23.81	25.51
Os12t0407000-00	Rice	mitochondrion	23.33	25.26
EER88419	Sorghum	nucleus	25.71	25.12
TraesCS7B01G240400.1	Wheat	plastid	23.33	25.0
KXG21744	Sorghum	nucleus	23.33	24.62
Bra026674.1-P	Field mustard	nucleus	23.81	24.27
CDX81816	Canola	nucleus	23.33	23.79
CDY21751	Canola	nucleus	23.33	23.79
HORVU5Hr1G110410.2	Barley	nucleus	21.9	23.71
CDX72908	Canola	nucleus	23.33	23.0
AT1G17310.2	Thale cress	nucleus	24.76	22.81
Solyc11g069770.1.1	Tomato	nucleus	19.52	22.65
Bra003884.1-P	Field mustard	cytosol	22.86	22.64
CDY50644	Canola	cytosol, mitochondrion, nucleus	22.38	22.17
CDX68270	Canola	cytosol, nucleus, plastid	22.38	22.17
EER89159	Sorghum	nucleus	23.81	21.83
KRH47706	Soybean	nucleus	26.19	21.57
Zm00001d046053_P001	Maize	mitochondrion, plastid	24.76	21.14
Zm00001d046054_P001	Maize	mitochondrion, plastid	24.76	21.14
AT1G72350.1	Thale cress	nucleus	22.38	20.98
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	24.76	19.48
KRH47704	Soybean	nucleus	25.71	18.82
KRH47701	Soybean	nucleus	25.24	18.66
HORVU5Hr1G110470.1	Barley	plastid	21.9	18.55
KRH06269	Soybean	nucleus	21.9	18.11

Protein Annotations

EntrezGene:100251432	wikigene:100251432	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB55813	ProteinID:CCB55813.1
ncoils:Coil	UniProt:F6HLT9	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EntrezGene:LOC100251432	wikigene:LOC100251432
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF157	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000210966A	ArrayExpress:VIT_10s0003g03970	EnsemblPlantsGene:VIT_10s0003g03970
EnsemblPlants:VIT_10s0003g03970.t01	RefSeq:XP_002271718	RefSeq:XP_002271718.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:6733116..6733788

Molecular Weight (calculated)

23300.8 Da

IEP (calculated)

6.098

GRAVY (calculated)

-0.377

Length

210 amino acids

Sequence
(BLAST)

001: MGRQKIEIKK IEKKSSLEVT FSKRRTGLFK KAGELCVLCG AEAAVIVFSP GRRAFVFGHP SADAVIDRFL HRETNSRALV PAGQVHGHVQ RQYLEALGRL
101: EVKKEQEETV GGDGEGGFWW DAPIENMGLN ELEQFRGSLE ELRKKVADRV EEMTMMMMME SGPSSTAMVE YAAPPQEYNS SGGVLHGHDL AAQGVPHGFD
201: FGFGFDEHLF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.