Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400002920 | Potato | nucleus | 66.85 | 68.75 |
Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 13.81 | 44.64 |
Solyc01g060310.1.1 | Tomato | nucleus, plastid | 23.76 | 30.94 |
Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 18.78 | 29.06 |
Solyc04g025030.1.1 | Tomato | mitochondrion | 21.55 | 28.89 |
Solyc10g018070.1.1 | Tomato | nucleus | 18.78 | 28.57 |
Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 19.89 | 27.69 |
TraesCS1A01G013100.1 | Wheat | nucleus | 28.73 | 27.51 |
GSMUA_Achr4P11900_001 | Banana | nucleus | 22.1 | 27.4 |
Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 28.18 | 26.84 |
Solyc01g106710.1.1 | Tomato | nucleus | 32.6 | 26.7 |
Solyc03g033890.1.1 | Tomato | nucleus | 20.44 | 26.43 |
Solyc01g106720.1.1 | Tomato | nucleus | 30.39 | 26.07 |
Solyc03g033570.1.1 | Tomato | nucleus | 25.97 | 25.82 |
TraesCS5B01G471900.1 | Wheat | mitochondrion | 24.31 | 25.43 |
Solyc10g018080.1.1 | Tomato | cytosol | 20.99 | 25.17 |
Solyc10g018110.1.1 | Tomato | nucleus | 25.41 | 25.0 |
TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 23.76 | 24.86 |
Solyc10g050950.1.1 | Tomato | nucleus | 22.1 | 24.84 |
KXG21744 | Sorghum | nucleus | 26.52 | 24.12 |
Solyc01g106730.1.1 | Tomato | mitochondrion | 29.28 | 23.98 |
Os12t0407000-00 | Rice | mitochondrion | 25.41 | 23.71 |
Solyc10g050900.1.1 | Tomato | nucleus | 22.1 | 23.67 |
Solyc03g033900.1.1 | Tomato | nucleus | 23.76 | 23.5 |
Zm00001d007891_P001 | Maize | nucleus | 24.86 | 23.44 |
KXG20143 | Sorghum | nucleus | 23.76 | 23.37 |
Solyc04g056740.1.1 | Tomato | nucleus | 23.2 | 23.33 |
HORVU7Hr1G081190.1 | Barley | nucleus | 19.34 | 23.33 |
Zm00001d042550_P001 | Maize | nucleus | 23.76 | 22.87 |
Solyc03g033880.1.1 | Tomato | cytosol | 23.2 | 22.83 |
HORVU5Hr1G110410.2 | Barley | nucleus | 24.31 | 22.68 |
Solyc04g056550.1.1 | Tomato | nucleus | 22.65 | 22.53 |
Solyc10g050940.1.1 | Tomato | nucleus | 20.99 | 22.49 |
Os06t0504100-00 | Rice | mitochondrion | 25.97 | 22.38 |
Solyc03g033940.1.1 | Tomato | nucleus | 23.2 | 22.34 |
Solyc01g060300.1.1 | Tomato | nucleus | 25.97 | 22.27 |
Solyc06g054680.1.1 | Tomato | nucleus | 21.55 | 21.67 |
Solyc01g097850.1.1 | Tomato | nucleus | 20.44 | 21.51 |
Solyc06g059780.1.1 | Tomato | nucleus | 20.99 | 21.11 |
TraesCS1B01G080200.1 | Wheat | nucleus | 19.89 | 20.22 |
Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 23.76 | 20.0 |
TraesCS1D01G062500.1 | Wheat | nucleus | 19.89 | 19.89 |
Solyc03g034260.1.1 | Tomato | nucleus | 19.89 | 19.57 |
VIT_10s0003g03970.t01 | Wine grape | nucleus | 22.65 | 19.52 |
TraesCS7D01G337200.1 | Wheat | plastid | 20.44 | 19.17 |
TraesCS7B01G240500.1 | Wheat | plastid | 20.44 | 19.17 |
EER88419 | Sorghum | nucleus | 22.65 | 19.07 |
VIT_07s0005g06590.t01 | Wine grape | nucleus | 22.1 | 19.05 |
Bra026674.1-P | Field mustard | nucleus | 21.55 | 18.93 |
CDY21751 | Canola | nucleus | 21.55 | 18.93 |
CDX81816 | Canola | nucleus | 21.55 | 18.93 |
TraesCS7B01G240400.1 | Wheat | plastid | 20.44 | 18.88 |
TraesCS7D01G337000.1 | Wheat | plastid | 20.44 | 18.88 |
TraesCS7B01G211300.1 | Wheat | plastid | 20.44 | 18.88 |
TraesCS7A01G342300.1 | Wheat | plastid | 20.44 | 18.78 |
TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 20.44 | 18.78 |
EER89159 | Sorghum | nucleus | 23.76 | 18.78 |
Solyc04g064860.1.1 | Tomato | plastid | 23.76 | 18.45 |
HORVU5Hr1G110470.1 | Barley | plastid | 24.86 | 18.15 |
TraesCS1A01G061800.1 | Wheat | nucleus | 17.13 | 18.13 |
Solyc01g106700.2.1 | Tomato | nucleus | 20.99 | 17.84 |
AT1G17310.2 | Thale cress | nucleus | 22.1 | 17.54 |
AT1G72350.1 | Thale cress | nucleus | 21.55 | 17.41 |
Solyc03g033930.1.1 | Tomato | cytosol | 9.39 | 17.0 |
KRH06269 | Soybean | nucleus | 23.76 | 16.93 |
CDY50644 | Canola | cytosol, mitochondrion, nucleus | 19.34 | 16.51 |
CDX68270 | Canola | cytosol, nucleus, plastid | 19.34 | 16.51 |
Bra003884.1-P | Field mustard | cytosol | 19.34 | 16.51 |
Zm00001d046053_P001 | Maize | mitochondrion, plastid | 22.1 | 16.26 |
Zm00001d046054_P001 | Maize | mitochondrion, plastid | 22.1 | 16.26 |
KRH47706 | Soybean | nucleus | 22.65 | 16.08 |
CDX72908 | Canola | nucleus | 18.23 | 15.49 |
KRH47701 | Soybean | nucleus | 23.2 | 14.79 |
KRH47704 | Soybean | nucleus | 23.2 | 14.63 |
HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 19.89 | 13.48 |
Solyc06g065960.1.1 | Tomato | nucleus | 6.63 | 13.19 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4DAD3 | PFAM:PF00319 |
PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF172 | SMART:SM00432 | SUPFAM:SSF55455 |
EnsemblPlantsGene:Solyc11g069770.1 | EnsemblPlants:Solyc11g069770.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00027693D9 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:54398695..54403014
Molecular Weight (calculated)
20858.9 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.572
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDLIMARL GRRRIRIEKI ENKKKRSVTF SKRRYGLFKK ESELSMLCDS PNATVVFSPD DETCVYSIGY PCVNSVLDKF MDVNPPQNLD DTGSLSVHRR
101: NAIREGVLAL MEIEEEFEEE KKREKSLDTG ISYENLNSSV YQNFIEKIEI GYMEAEQLAI ELKERNVPFP YSTFGDALAP K
101: NAIREGVLAL MEIEEEFEEE KKREKSLDTG ISYENLNSSV YQNFIEKIEI GYMEAEQLAI ELKERNVPFP YSTFGDALAP K
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.