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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 5
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002920 Potato nucleus 66.85 68.75
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 13.81 44.64
Solyc01g060310.1.1 Tomato nucleus, plastid 23.76 30.94
Solyc04g025970.1.1 Tomato cytosol, nucleus, peroxisome 18.78 29.06
Solyc04g025030.1.1 Tomato mitochondrion 21.55 28.89
Solyc10g018070.1.1 Tomato nucleus 18.78 28.57
Solyc04g025110.1.1 Tomato mitochondrion, nucleus, plastid 19.89 27.69
TraesCS1A01G013100.1 Wheat nucleus 28.73 27.51
GSMUA_Achr4P11900_001 Banana nucleus 22.1 27.4
Solyc04g047870.1.1 Tomato mitochondrion, nucleus 28.18 26.84
Solyc01g106710.1.1 Tomato nucleus 32.6 26.7
Solyc03g033890.1.1 Tomato nucleus 20.44 26.43
Solyc01g106720.1.1 Tomato nucleus 30.39 26.07
Solyc03g033570.1.1 Tomato nucleus 25.97 25.82
TraesCS5B01G471900.1 Wheat mitochondrion 24.31 25.43
Solyc10g018080.1.1 Tomato cytosol 20.99 25.17
Solyc10g018110.1.1 Tomato nucleus 25.41 25.0
TraesCS5D01G474300.1 Wheat mitochondrion, nucleus, plastid 23.76 24.86
Solyc10g050950.1.1 Tomato nucleus 22.1 24.84
KXG21744 Sorghum nucleus 26.52 24.12
Solyc01g106730.1.1 Tomato mitochondrion 29.28 23.98
Os12t0407000-00 Rice mitochondrion 25.41 23.71
Solyc10g050900.1.1 Tomato nucleus 22.1 23.67
Solyc03g033900.1.1 Tomato nucleus 23.76 23.5
Zm00001d007891_P001 Maize nucleus 24.86 23.44
KXG20143 Sorghum nucleus 23.76 23.37
Solyc04g056740.1.1 Tomato nucleus 23.2 23.33
HORVU7Hr1G081190.1 Barley nucleus 19.34 23.33
Zm00001d042550_P001 Maize nucleus 23.76 22.87
Solyc03g033880.1.1 Tomato cytosol 23.2 22.83
HORVU5Hr1G110410.2 Barley nucleus 24.31 22.68
Solyc04g056550.1.1 Tomato nucleus 22.65 22.53
Solyc10g050940.1.1 Tomato nucleus 20.99 22.49
Os06t0504100-00 Rice mitochondrion 25.97 22.38
Solyc03g033940.1.1 Tomato nucleus 23.2 22.34
Solyc01g060300.1.1 Tomato nucleus 25.97 22.27
Solyc06g054680.1.1 Tomato nucleus 21.55 21.67
Solyc01g097850.1.1 Tomato nucleus 20.44 21.51
Solyc06g059780.1.1 Tomato nucleus 20.99 21.11
TraesCS1B01G080200.1 Wheat nucleus 19.89 20.22
Solyc03g007020.1.1 Tomato mitochondrion, nucleus, plastid 23.76 20.0
TraesCS1D01G062500.1 Wheat nucleus 19.89 19.89
Solyc03g034260.1.1 Tomato nucleus 19.89 19.57
VIT_10s0003g03970.t01 Wine grape nucleus 22.65 19.52
TraesCS7D01G337200.1 Wheat plastid 20.44 19.17
TraesCS7B01G240500.1 Wheat plastid 20.44 19.17
EER88419 Sorghum nucleus 22.65 19.07
VIT_07s0005g06590.t01 Wine grape nucleus 22.1 19.05
Bra026674.1-P Field mustard nucleus 21.55 18.93
CDY21751 Canola nucleus 21.55 18.93
CDX81816 Canola nucleus 21.55 18.93
TraesCS7B01G240400.1 Wheat plastid 20.44 18.88
TraesCS7D01G337000.1 Wheat plastid 20.44 18.88
TraesCS7B01G211300.1 Wheat plastid 20.44 18.88
TraesCS7A01G342300.1 Wheat plastid 20.44 18.78
TraesCS7A01G342600.1 Wheat nucleus, plastid 20.44 18.78
EER89159 Sorghum nucleus 23.76 18.78
Solyc04g064860.1.1 Tomato plastid 23.76 18.45
HORVU5Hr1G110470.1 Barley plastid 24.86 18.15
TraesCS1A01G061800.1 Wheat nucleus 17.13 18.13
Solyc01g106700.2.1 Tomato nucleus 20.99 17.84
AT1G17310.2 Thale cress nucleus 22.1 17.54
AT1G72350.1 Thale cress nucleus 21.55 17.41
Solyc03g033930.1.1 Tomato cytosol 9.39 17.0
KRH06269 Soybean nucleus 23.76 16.93
CDY50644 Canola cytosol, mitochondrion, nucleus 19.34 16.51
CDX68270 Canola cytosol, nucleus, plastid 19.34 16.51
Bra003884.1-P Field mustard cytosol 19.34 16.51
Zm00001d046053_P001 Maize mitochondrion, plastid 22.1 16.26
Zm00001d046054_P001 Maize mitochondrion, plastid 22.1 16.26
KRH47706 Soybean nucleus 22.65 16.08
CDX72908 Canola nucleus 18.23 15.49
KRH47701 Soybean nucleus 23.2 14.79
KRH47704 Soybean nucleus 23.2 14.63
HORVU7Hr1G081070.1 Barley mitochondrion, nucleus 19.89 13.48
Solyc06g065960.1.1 Tomato nucleus 6.63 13.19
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0046983InterPro:IPR002100InterPro:IPR036879UniProt:K4DAD3PFAM:PF00319
PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945PANTHER:PTHR11945:SF172SMART:SM00432SUPFAM:SSF55455
EnsemblPlantsGene:Solyc11g069770.1EnsemblPlants:Solyc11g069770.1.1InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI00027693D9SEG:seg
Description
No Description!
Coordinates
chr11:+:54398695..54403014
Molecular Weight (calculated)
20858.9 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.572
Length
181 amino acids
Sequence
(BLAST)
001: MGRDLIMARL GRRRIRIEKI ENKKKRSVTF SKRRYGLFKK ESELSMLCDS PNATVVFSPD DETCVYSIGY PCVNSVLDKF MDVNPPQNLD DTGSLSVHRR
101: NAIREGVLAL MEIEEEFEEE KKREKSLDTG ISYENLNSSV YQNFIEKIEI GYMEAEQLAI ELKERNVPFP YSTFGDALAP K
Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.