Factsheet for HORVU5Hr1G110470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G110410.2	Barley	nucleus	75.0	95.88
TraesCS5B01G471900.1	Wheat	mitochondrion	60.48	86.71
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	58.87	84.39
HORVU7Hr1G081190.1	Barley	nucleus	32.66	54.0
Os06t0504100-00	Rice	mitochondrion	40.73	48.1
Os12t0407000-00	Rice	mitochondrion	37.1	47.42
KXG21744	Sorghum	nucleus	35.48	44.22
KXG20143	Sorghum	nucleus	31.85	42.93
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	44.35	41.2
Zm00001d007891_P001	Maize	nucleus	31.45	40.62
Zm00001d042550_P001	Maize	nucleus	29.84	39.36
EER89159	Sorghum	nucleus	36.29	39.3
HORVU6Hr1G081660.1	Barley	nucleus	27.02	37.02
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	27.02	37.02
EER88419	Sorghum	nucleus	31.45	36.28
Zm00001d046053_P001	Maize	mitochondrion, plastid	33.87	34.15
Zm00001d046054_P001	Maize	mitochondrion, plastid	33.87	34.15
GSMUA_Achr4P11900_001	Banana	nucleus	16.94	28.77
Solyc11g069770.1.1	Tomato	nucleus	18.15	24.86
AT1G17310.2	Thale cress	nucleus	22.58	24.56
Bra026674.1-P	Field mustard	nucleus	19.76	23.79
CDX81816	Canola	nucleus	19.76	23.79
CDY21751	Canola	nucleus	19.35	23.3
CDX72908	Canola	nucleus	19.35	22.54
VIT_10s0003g03970.t01	Wine grape	nucleus	18.55	21.9
VIT_07s0005g06590.t01	Wine grape	nucleus	18.55	21.9
CDY50644	Canola	cytosol, mitochondrion, nucleus	18.55	21.7
CDX68270	Canola	cytosol, nucleus, plastid	18.55	21.7
Bra003884.1-P	Field mustard	cytosol	18.15	21.23
PGSC0003DMT400002920	Potato	nucleus	13.71	19.32
AT1G72350.1	Thale cress	nucleus	17.34	19.2
KRH06269	Soybean	nucleus	18.95	18.5
KRH47706	Soybean	nucleus	18.95	18.43
KRH47701	Soybean	nucleus	19.76	17.25
KRH47704	Soybean	nucleus	19.35	16.72
HORVU3Hr1G086260.1	Barley	nucleus	20.56	15.22
HORVU1Hr1G067950.1	Barley	nucleus	18.95	10.88

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287SPY1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU5Hr1G110470	EnsemblPlants:HORVU5Hr1G110470.1	InterPro:IPR002100	InterPro:IPR036879
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF339	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000B461C8B	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:632829459..632830355

Molecular Weight (calculated)

27781.2 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.360

Length

248 amino acids

Sequence
(BLAST)

001: SPSRCWLAAA FNPTQTRDQI KKPPRSSRAL DLIGSFIYSY TVLVLRCVAE SRTQKTEEEL QASNTAAAFP RCWIDRSIAT MVRPRGTTST GRHRIEMSLR
101: PDKNSRQVTF SKRRAGLFKK CSELSILCGA RVAVVVFSEA GNVFALGSPS MEAVLRLHDS APVPAADVDD REVLEEMFRA REATAEQVAS EVARMNSIAD
201: KVVKAQMGRR YWWEADVEAL GEDELPEFAR ALDRLRANVR RHADKLLP

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.