Factsheet for HORVU6Hr1G081660.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	84.53	84.53
TraesCS6D01G319100.1	Wheat	nucleus	93.37	65.5
TraesCS6A01G338400.1	Wheat	nucleus	89.5	64.54
TraesCS6B01G369100.1	Wheat	nucleus	91.16	64.2
TraesCS6B01G369000.1	Wheat	nucleus	90.61	64.06
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	19.34	57.38
Os01t0975800-00	Rice	nucleus	60.77	52.88
Zm00001d039080_P001	Maize	nucleus	67.4	49.39
Os09t0116800-00	Rice	mitochondrion	56.91	49.05
EES19977	Sorghum	nucleus	65.19	48.16
Zm00001d009628_P001	Maize	nucleus	64.64	47.18
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	49.17	39.56
GSMUA_Achr8P07230_001	Banana	nucleus	50.83	38.98
HORVU7Hr1G081190.1	Barley	nucleus	30.39	36.67
HORVU5Hr1G110410.2	Barley	nucleus	36.46	34.02
HORVU3Hr1G086260.1	Barley	nucleus	59.12	31.94
HORVU5Hr1G110470.1	Barley	plastid	37.02	27.02
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	35.91	24.34
HORVU1Hr1G067950.1	Barley	nucleus	53.59	22.45

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287UXJ1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:HORVU6Hr1G081660
EnsemblPlants:HORVU6Hr1G081660.1	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000B46E6B5	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:546114719..546115271

Molecular Weight (calculated)

19485.4 Da

IEP (calculated)

8.049

GRAVY (calculated)

-0.171

Length

181 amino acids

Sequence
(BLAST)

001: MSMAPKRKLS MGRQKIEIRR IESEEARQVC FSKRRAGLFK KVSELAVLCG AEVAAVVFSP AGKAFSFGHP SVEAILDRFL PSAAQVGPAA GCAGLGAAGD
101: RNLAELNRQY GQLREQLEAE KARKERAEVA MEKERATGSP VAAWLDADLR DLGEEELMAF AAALVDVQAA VSARANQVLQ E

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.