Factsheet for Zm00001d039080_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009628_P001	Maize	nucleus	94.33	93.95
HORVU6Hr1G081660.1	Barley	nucleus	49.39	67.4
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	48.58	66.3
TraesCS6A01G338400.1	Wheat	nucleus	60.32	59.36
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	14.57	59.02
TraesCS6D01G319100.1	Wheat	nucleus	61.54	58.91
TraesCS6B01G369100.1	Wheat	nucleus	61.13	58.75
Os01t0975800-00	Rice	nucleus	49.39	58.65
TraesCS6B01G369000.1	Wheat	nucleus	59.51	57.42
Os09t0116800-00	Rice	mitochondrion	48.58	57.14
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	59.51	56.98
TraesCS3A01G535200.1	Wheat	nucleus	59.92	56.92
TraesCS3B01G608600.1	Wheat	mitochondrion	59.51	56.54
TraesCS3B01G612700.1	Wheat	nucleus	34.41	43.81
TraesCSU01G235300.1	Wheat	nucleus	33.6	42.78
GSMUA_Achr8P07230_001	Banana	nucleus	40.08	41.95
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	37.65	41.33
TraesCS3B01G612300.1	Wheat	nucleus	28.74	41.04
TraesCS5B01G008000.1	Wheat	nucleus	39.68	38.43
TraesCS3D01G513800.1	Wheat	nucleus, plastid	43.32	38.08
TraesCS3B01G612800.1	Wheat	nucleus	41.3	35.92
TraesCS3B01G612900.1	Wheat	nucleus	41.3	35.92
TraesCS3D01G532900.1	Wheat	nucleus	35.22	34.66
Zm00001d019213_P001	Maize	nucleus	37.25	34.33
Zm00001d007891_P001	Maize	nucleus	26.32	33.85
Zm00001d042550_P001	Maize	nucleus	25.51	33.51
TraesCS3A01G359300.1	Wheat	nucleus	44.13	33.13
TraesCS3B01G612500.1	Wheat	nucleus	42.11	32.7
TraesCS3B01G612600.1	Wheat	nucleus	42.51	32.01
TraesCS1B01G322300.1	Wheat	nucleus	40.49	31.85
TraesCS3D01G446900.1	Wheat	nucleus	42.51	31.82
TraesCS1D01G310700.1	Wheat	nucleus	39.68	31.61
TraesCS3B01G612400.1	Wheat	nucleus	42.11	31.14
HORVU3Hr1G086260.1	Barley	nucleus	42.11	31.04
TraesCS3B01G493100.1	Wheat	nucleus	41.3	29.14
TraesCS5A01G010400.1	Wheat	nucleus	35.22	28.52
Zm00001d024389_P001	Maize	nucleus	28.34	27.78
TraesCS3B01G595700.1	Wheat	nucleus	42.91	27.39
TraesCS3A01G527400.1	Wheat	nucleus	42.51	26.32
Zm00001d046053_P001	Maize	mitochondrion, plastid	25.91	26.02
Zm00001d046054_P001	Maize	mitochondrion, plastid	25.91	26.02
TraesCS3A01G454500.1	Wheat	nucleus	31.98	25.32
Zm00001d019214_P001	Maize	nucleus	29.55	24.91
Zm00001d038015_P001	Maize	nucleus	28.74	23.43
HORVU1Hr1G067950.1	Barley	nucleus	40.89	23.38
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	25.91	20.45

Protein Annotations

EntrezGene:100284657	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AQK88694.1	UniProt:B6TW43	ncoils:Coil
EMBL:EU969208	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000182D6F5	EnsemblPlantsGene:Zm00001d039080	EnsemblPlants:Zm00001d039080_P001	EnsemblPlants:Zm00001d039080_T001
SEG:seg	:	:	:	:	:

Description

MADS-transcription factor 70DNA binding protein%3B Putative MADS-box transcription factor family protein

Coordinates

chr6:-:169689637..169690380

Molecular Weight (calculated)

25303.9 Da

IEP (calculated)

7.586

GRAVY (calculated)

-0.150

Length

247 amino acids

Sequence
(BLAST)

001: MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG KAFSFGHPSV ESVVDRFLAS STPSPAGAGA GAGHSSAGGG
101: EDRAVSELNR QHGDLRAQLD AEKARQERAD EAIRKEREAG SPAMAWIDAD LGAMGHDDLV AFWAALAGVQ AAVAASADQL LRDALLVGRR GRQQQQPAAQ
201: LGGGGVAFDV GAFGIGVQVP PPPGFAGVDL QGFGGQAAAI LGAGGPS

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.