Factsheet for TraesCS3A01G454500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G446900.1	Wheat	nucleus	85.26	80.61
TraesCS3B01G493100.1	Wheat	nucleus	88.78	79.14
TraesCS5A01G010400.1	Wheat	nucleus	58.33	59.67
TraesCS3A01G359300.1	Wheat	nucleus	58.01	55.02
HORVU3Hr1G086260.1	Barley	nucleus	54.49	50.75
TraesCS3A01G535200.1	Wheat	nucleus	33.33	40.0
TraesCS6A01G338400.1	Wheat	nucleus	31.09	38.65
Zm00001d039080_P001	Maize	nucleus	25.32	31.98
TraesCS3A01G527400.1	Wheat	nucleus	40.71	31.83
Zm00001d009628_P001	Maize	nucleus	24.36	30.65
EES19977	Sorghum	nucleus	23.72	30.2
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	5.45	27.87
Os01t0975800-00	Rice	nucleus	17.31	25.96
Os09t0116800-00	Rice	mitochondrion	17.31	25.71
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	16.67	23.11
GSMUA_Achr8P07230_001	Banana	nucleus	16.67	22.03
TraesCS6A01G138300.1	Wheat	nucleus	12.5	19.8
TraesCS1A01G013100.1	Wheat	nucleus	11.86	19.58
TraesCS7A01G342300.1	Wheat	plastid	11.86	18.78
TraesCS7A01G342600.1	Wheat	nucleus, plastid	11.86	18.78
TraesCS1A01G061800.1	Wheat	nucleus	9.94	18.13

Protein Annotations

EnsemblPlants:TraesCS3A01G454500.1	EnsemblPlantsGene:TraesCS3A01G454500	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
SEG:seg	SUPFAM:SSF55455	MapMan:15.5.14	:	:	:

Description

No Description!

Coordinates

chr3A:+:692677538..692678817

Molecular Weight (calculated)

33972.5 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.160

Length

312 amino acids

Sequence
(BLAST)

001: MAVMCGAEVA IVAFSPGGKA FSFGHPSVEA VIDRFLAGGG AGVLSIANDN ELKKLHLQHG ELRMLLKEVK ERKECMEKAM AKERTAGDQI AMWLNPKLCA
101: MGEEEIIAFA AKLRVVRAAV SERTNQALLD KQKTHHMLQA PAPPLQQLFG GSTFEFGSSS SANTGMEMQQ MHMVMPPMQG FAAGMDMHHM PMEMPPPLGS
201: AYGMDMQQIL MPTTSPSRFD AGMEMQQMVT VMSPQLEFAT EAEMQQMFMA MFLMSEFSAG MEMPPPTGIA AGVEMVQQGP GTNMGFPYLG EGDKIHTESE
301: SESESECLNQ SE

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.