Factsheet for GSMUA_Achr5P26530_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plasma membrane	3.56	72.73
GSMUA_Achr8P07230_001	Banana	nucleus	71.11	67.8
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.78	50.82
HORVU6Hr1G081660.1	Barley	nucleus	39.56	49.17
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	38.22	47.51
TraesCS6A01G338400.1	Wheat	nucleus	43.11	38.65
EES19977	Sorghum	nucleus	41.33	37.96
Zm00001d039080_P001	Maize	nucleus	41.33	37.65
Os09t0116800-00	Rice	mitochondrion	35.11	37.62
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	43.11	37.6
Zm00001d009628_P001	Maize	nucleus	41.33	37.5
TraesCS3A01G535200.1	Wheat	nucleus	43.11	37.31
TraesCS3B01G608600.1	Wheat	mitochondrion	43.11	37.31
TraesCS6D01G319100.1	Wheat	nucleus	42.67	37.21
TraesCS6B01G369000.1	Wheat	nucleus	41.78	36.72
TraesCS6B01G369100.1	Wheat	nucleus	41.78	36.58
TraesCS6A01G138300.1	Wheat	nucleus	31.56	36.04
GSMUA_Achr4P11900_001	Banana	nucleus	23.11	35.62
Os01t0975800-00	Rice	nucleus	32.89	35.58
GSMUA_Achr5P01940_001	Banana	nucleus	36.44	33.61
TraesCS3B01G612300.1	Wheat	nucleus	25.33	32.95
TraesCSU01G235300.1	Wheat	nucleus	28.0	32.47
TraesCS3B01G612700.1	Wheat	nucleus	27.56	31.96
EER96088	Sorghum	nucleus	34.67	31.71
KXG34716	Sorghum	nucleus	32.44	31.47
GSMUA_Achr4P28260_001	Banana	nucleus	34.22	31.3
KXG34713	Sorghum	nucleus	34.22	31.3
KXG24793	Sorghum	nucleus	32.44	29.55
Zm00001d019213_P001	Maize	nucleus	35.11	29.48
OQU80165	Sorghum	nucleus	27.56	29.25
OQU80162	Sorghum	nucleus	32.0	29.15
OQU75616	Sorghum	nucleus	32.0	29.15
KXG24792	Sorghum	nucleus	31.56	28.74
Zm00001d024389_P001	Maize	nucleus	31.11	27.78
TraesCS5B01G008000.1	Wheat	nucleus	30.67	27.06
EER96091	Sorghum	nucleus	28.89	26.97
Zm00001d038015_P001	Maize	nucleus	34.22	25.41
TraesCS3D01G513800.1	Wheat	nucleus, plastid	31.56	25.27
KXG29537	Sorghum	nucleus	34.67	25.0
TraesCS3D01G446900.1	Wheat	nucleus	35.56	24.24
Zm00001d019214_P001	Maize	nucleus	31.56	24.23
TraesCS1B01G322300.1	Wheat	nucleus	33.78	24.2
TraesCS1D01G310700.1	Wheat	nucleus	33.33	24.19
TraesCS3B01G612800.1	Wheat	nucleus	30.22	23.94
TraesCS3B01G612900.1	Wheat	nucleus	30.22	23.94
TraesCS3A01G359300.1	Wheat	nucleus	34.67	23.71
TraesCS3D01G532900.1	Wheat	nucleus	26.22	23.51
HORVU3Hr1G086260.1	Barley	nucleus	34.22	22.99
TraesCS3B01G493100.1	Wheat	nucleus	35.11	22.57
TraesCS3B01G612500.1	Wheat	nucleus	30.67	21.7
TraesCS3B01G612600.1	Wheat	nucleus	31.56	21.65
TraesCS3B01G612400.1	Wheat	nucleus	31.56	21.26
GSMUA_Achr5P01990_001	Banana	nucleus	32.0	20.75
TraesCS3B01G595700.1	Wheat	nucleus	31.56	18.35
TraesCS5A01G010400.1	Wheat	nucleus	24.44	18.03
HORVU1Hr1G067950.1	Barley	nucleus	33.33	17.36
TraesCS3A01G454500.1	Wheat	nucleus	23.11	16.67
TraesCS3A01G527400.1	Wheat	nucleus	28.89	16.29
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	14.22	10.22

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr5G26530_001	EnsemblPlants:GSMUA_Achr5P26530_001	EnsemblPlants:GSMUA_Achr5T26530_001
InterPro:IPR002100	InterPro:IPR036879	UniProt:M0T1X8	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000295C343	SEG:seg	:	:	:

Description

Putative OsMADS79 - MADS-box family gene with M-alpha type-box [Source:GMGC_GENE;Acc:GSMUA_Achr5G26530_001]

Coordinates

chr5:-:27291128..27291805

Molecular Weight (calculated)

24464.7 Da

IEP (calculated)

9.586

GRAVY (calculated)

-0.065

Length

225 amino acids

Sequence
(BLAST)

001: MIPPRKKKTS MGRQRIEIKR IENEEARQVC FSKRRAGLFK KATELSVLCG AEIALVVFSP AGKPFSFGHP SVDSVVGRFL SGGAAPTPTP VVDHRMVPAR
101: ASLVHELDRQ YLELGERLAA ERARKDALEA ALRGRWGSTA GLLDANLEEI GLVELERLRE ALERLRWDVA MRVNQLVIEV QTRSVVMAGD AAAGGFVGGF
201: LAAAEEGVVA LPPQHGFSYG YGGIF

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.