Factsheet for TraesCS6A01G338400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G319100.1	Wheat	nucleus	96.02	93.41
TraesCS6B01G369000.1	Wheat	nucleus	94.02	92.19
TraesCS6B01G369100.1	Wheat	nucleus	93.63	91.44
HORVU6Hr1G081660.1	Barley	nucleus	64.54	89.5
TraesCS3A01G535200.1	Wheat	nucleus	80.48	77.69
Zm00001d039080_P001	Maize	nucleus	59.36	60.32
EES19977	Sorghum	nucleus	56.97	58.37
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.94	57.38
Zm00001d009628_P001	Maize	nucleus	56.57	57.26
Os01t0975800-00	Rice	nucleus	46.22	55.77
Os09t0116800-00	Rice	mitochondrion	42.63	50.95
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	38.65	43.11
GSMUA_Achr8P07230_001	Banana	nucleus	39.84	42.37
TraesCS3A01G359300.1	Wheat	nucleus	51.39	39.21
TraesCS5A01G010400.1	Wheat	nucleus	45.02	37.05
TraesCS6A01G138300.1	Wheat	nucleus	28.69	36.55
TraesCS7A01G342300.1	Wheat	plastid	28.29	36.04
TraesCS7A01G342600.1	Wheat	nucleus, plastid	27.09	34.52
TraesCS1A01G061800.1	Wheat	nucleus	23.51	34.5
TraesCS3A01G454500.1	Wheat	nucleus	38.65	31.09
TraesCS1A01G013100.1	Wheat	nucleus	22.31	29.63
TraesCS3A01G527400.1	Wheat	nucleus	43.43	27.32

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS6A01G338400	EnsemblPlants:TraesCS6A01G338400.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:571881423..571882178

Molecular Weight (calculated)

26933.3 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.267

Length

251 amino acids

Sequence
(BLAST)

001: MAPKRKLSMG RQKIEIRRIE SEEARQVCFS KRRAGLFKKV SELAVLCGAE VAAVVFSPAG KAFSFGHPSV EAILDRFIPS AAAQVGAAAG LGAAGDRNLA
101: ELNRQYGQLR EQLEAEKARK DRAEEAMAEE RAKGSPAAAW LDADLRDLGE EELMAFAAAL ADVQTAVSAR ANQVLQEALD VGRARSASRM LLAPPPPQQQ
201: LAGGGGFEFA NSRNEMEMQQ MLMAMPPPPE FAATGMEMVQ QGLGQNAGFP Y

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.