Factsheet for TraesCS6B01G369000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G338400.1	Wheat	nucleus	92.19	94.02
TraesCS6D01G319100.1	Wheat	nucleus	92.19	91.47
TraesCS6B01G369100.1	Wheat	nucleus	91.02	90.66
HORVU6Hr1G081660.1	Barley	nucleus	64.06	90.61
TraesCS3B01G608600.1	Wheat	mitochondrion	78.52	77.31
Zm00001d039080_P001	Maize	nucleus	57.42	59.51
EES19977	Sorghum	nucleus	55.08	57.55
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.67	57.38
Zm00001d009628_P001	Maize	nucleus	55.47	57.26
Os01t0975800-00	Rice	nucleus	45.7	56.25
Os09t0116800-00	Rice	mitochondrion	42.97	52.38
TraesCS5B01G008000.1	Wheat	nucleus	45.7	45.88
TraesCS3B01G612700.1	Wheat	nucleus	33.98	44.85
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	36.72	41.78
TraesCS3B01G612300.1	Wheat	nucleus	28.12	41.62
GSMUA_Achr8P07230_001	Banana	nucleus	38.28	41.53
TraesCS3B01G612800.1	Wheat	nucleus	45.31	40.85
TraesCS3B01G612900.1	Wheat	nucleus	45.31	40.85
TraesCS5B01G471900.1	Wheat	mitochondrion	26.56	39.31
TraesCS1B01G322300.1	Wheat	nucleus	46.48	37.9
TraesCS3B01G612500.1	Wheat	nucleus	46.09	37.11
TraesCS3B01G612600.1	Wheat	nucleus	46.88	36.59
TraesCS1B01G080200.1	Wheat	nucleus	25.0	35.96
TraesCS3B01G612400.1	Wheat	nucleus	46.88	35.93
TraesCS3B01G493100.1	Wheat	nucleus	46.09	33.71
TraesCS7B01G240500.1	Wheat	plastid	25.0	33.16
TraesCS7B01G211300.1	Wheat	plastid	23.83	31.12
TraesCS7B01G240400.1	Wheat	plastid	23.83	31.12
TraesCS3B01G595700.1	Wheat	nucleus	44.53	29.46
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	30.47	24.92

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS6B01G369000	EnsemblPlants:TraesCS6B01G369000.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:642989559..642990329

Molecular Weight (calculated)

27406.0 Da

IEP (calculated)

5.517

GRAVY (calculated)

-0.232

Length

256 amino acids

Sequence
(BLAST)

001: MAPKRKLSMG RQKIEIRRIE SEEARQVCFS KRRAGLFKKV SELAVLCGAE VAAVVFSPAG KAFSFGHPSV EAILDRFIPS AAAQVGPAAG LGAAGDRNLA
101: ELNRQYGQLR EQLESEKARK ERADEAMEKE RATGSPAAAW LDAYLRDLGE EELMAFAAAL VDVQGAVSAR ANQVLQEALD VGRARSASRM LLAPPPQQEL
201: AGGGGFEFAS CGANSRNEME MQQMLMAMPP PPEFAAAGME MIQVQQGLGP NAGLPY

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.